Array 1 8326-6703 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMH01000002.1 Neisseria lactamica strain M37130 M37130_HUY4067A180_cleaned_ctg_8131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8325 32 100.0 35 ................................ ACGCTACGCCTTCCTCGGCGCATACGGTTACGGCC 8258 32 100.0 35 ................................ AAGCCCAAGGCTACCAATACGATCCTGAAACCGAC 8191 32 100.0 33 ................................ AAGTTGTCGCAACATTCGGCAGGGACGCGCAAG 8126 32 100.0 34 ................................ TTTATGGATACCCCTTGCCGCCCTGCCGAAAAAA 8060 32 100.0 34 ................................ TTCGCACCCAATAAGGTTGCAGGATAATTTACAG 7994 32 100.0 36 ................................ CCTCATCTTACAAAAGCCGTCTGGAAAAATCAAGGA 7926 32 100.0 33 ................................ GATTGCCGCCTGTGCGGCGTTGGACGCGGCGGT 7861 32 100.0 34 ................................ TTCGACGGAGCGCTCGACCATAGTGCGTACCTTG 7795 32 100.0 36 ................................ AACAAAGCTCCGTCCGTACTGTTGCCGATAACAAAG 7727 32 100.0 33 ................................ TATGGGGCATCTGCGTTATCAGGATAATATCAA 7662 32 100.0 34 ................................ ATTTGTGCCGGCGCCTTGTTGATTGCCCGAGAAA 7596 32 100.0 35 ................................ GCCTTCCGCCGTTCCTTCATCCTGACCCAGCCCCA 7529 32 100.0 36 ................................ CGCCGATTTATAAAGCCCAAACGCCTTTTTATCCAA 7461 32 100.0 34 ................................ TACAGTTGGCTCAAACATCTCTTTCGTCAAATTC 7395 32 100.0 35 ................................ GCGCAGTATTACAGCGTTCACGTAGTGAATCCGCT 7328 32 100.0 34 ................................ ATCGTCAAAATGAAATTCCTGAATTATCGGCGAG 7262 32 100.0 35 ................................ TTTAAACAACTGAAGGAAATTGAAAAATGTTTGAA 7195 32 100.0 33 ................................ GGCAAAGTTTGACAACAATTCAAAAGGTTTAAA 7130 32 100.0 33 ................................ CTCCGAAACGATTGTTTGCGTTTGACCTTCGCC 7065 32 100.0 34 ................................ TGCCTAATGGACTTAAGATTTTTTGGTGTGTAGC 6999 32 100.0 34 ................................ TTTCAAAATAAAGCTGATATTGCCTCTCTGTTTC 6933 32 100.0 37 ................................ GGACGGCCGTCAGCCATGTACGGCATGTCTTCCACAG 6864 32 100.0 33 ................................ CGAGATAAGGTAGAAATATGATTTATTTGTTTA 6799 32 100.0 33 ................................ ATTAAAAAACTTTTTTCGCGGTATGCTTCGGGT 6734 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ ===================================== ================== 25 32 99.8 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATTTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGAATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAACAGGTTGATATTATCCGCACATATTAATATAATGATAATTATTATTAATCAAATAGGGAAAATGTAGGGATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCAGCCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGACGGAATATTGCAACTTCTGATAAGGATGGCAATGATTTTCCAAATAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 266308-266074 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMH01000002.1 Neisseria lactamica strain M37130 M37130_HUY4067A180_cleaned_ctg_8131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 266307 36 100.0 30 .................................... TGATTTGCGCGTCGGTTGCGCCGAAATTGC 266241 36 100.0 30 .................................... TCTACAGCCTCAACGATTTACACAAAGCAG 266175 36 100.0 30 .................................... TCTCTTCCAGCTTTTTGGCATCCATTTCTT 266109 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATTAAGGCTAGAATAACCCTAGCATCAATCGTAACAGTCAATTGCAAAATTCCTATGGTAAGAGAGATTTGCATTTTGATTTTTCCTGTTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTGTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGCTCTTTAAGTTTCGCGCCTCTCGCGCCTGAATCTATCTCATAAAGTTCCTTATATATTA # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //