Array 1 87873-88106 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDYC01000002.1 Streptococcus dysgalactiae subsp. equisimilis strain WCHSDSE-1 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87873 36 94.4 30 ....AC.............................. AGGTACAAGTATTACTGACATCACCAAAGA 87939 36 100.0 30 .................................... AAATTGAAGAGGTTATTGACGAATTAAGAA 88005 36 100.0 30 .................................... ATTTTTATCATTTGAGAGTGATATGTCAAT 88071 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGTAAGGCATTTCGATTTTTCCATCTACGATTGCTTTTTCCATTTCGAAGCTTGTTACGTTGATTTTCATTTTGTTTTACCTCTTTTGTTTTATCTTTATGATTATATTATATACAATATTGTATACTTTGTCAATAGAAAAGATAAATTTTTTTAAAATTATTTTTTAGTCCATTAAACCAGACTTAATTTAAAAAGTCCTTTTTACGAGACTTTTACGAATAATAAGATAAGGAGGTGCATTATGCTAACATACGACGAATTTAAGCAAGCTATTGACCGTGGATATATCGTAGAAGACACAGTCACGATCGTGCGCAAAAACGGACAGATTTTTGATTATGTGTTGCCACATGAGAAAGCAAAGAATGGAGAAGTTGTGACAGACGAAAAAGTGGAAGAAGTGATGATGGAATTAGACAAATAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGGACAGATTGTCCAATCTATTGATATAAAGCCTTTTTA # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 18138-16912 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDYC01000023.1 Streptococcus dysgalactiae subsp. equisimilis strain WCHSDSE-1 contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18137 32 100.0 33 ................................ AAATTTGTAATTCCTGAACAGTTAGAAGAAATT 18072 32 100.0 34 ................................ TTCCCTCATCATTGAGTCCTGAGAACTGATACCC 18006 32 100.0 36 ................................ AAAACTTACAGATAAATGAAGAAGATGATTTCATTC 17938 32 100.0 34 ................................ TTCCACCTCTGCCAACACATAAACTCTCTCTCTG 17872 32 100.0 33 ................................ TGTTGTTGTGTCAGAGCCACGTTTTAAGACCTC 17807 32 100.0 34 ................................ CATCCATAAAGGCAAGGTTCGTGCTTCCAATGAT 17741 32 100.0 35 ................................ TAAAAAGTCGGCATCAACATTTTTAAAACTATTGT 17674 32 100.0 35 ................................ TAAAAAGTCGGCATCAACATTTTTAAAACTATTGT 17607 32 100.0 36 ................................ AATAATATCAACAGTCTCCAGTCTCCCATCAAGATT 17539 32 100.0 34 ................................ TTTATCTGTGCCGCGGTTATCATAGAATAAAAGC 17473 32 100.0 34 ................................ TCTTATTATCTTCGATAAACGAGAATACTTTTAT 17407 32 100.0 35 ................................ GCTAAATTTAAAATCCTTGAACTTGCTCATACAAT 17340 32 100.0 36 ................................ ATTTAATAGCTTTCCTGTAAATATTTAAAACTTAAT 17272 32 100.0 33 ................................ TATTGGTATATACAGCAACAACAAGGAAGGTTA 17207 32 100.0 33 ................................ TACCTCAGTATAGGTGTCAGCTTAGACGAATTT 17142 32 100.0 33 ................................ AAAAGTGCAACGAACCAATAAAGAAGTAGCTGA 17077 32 100.0 35 ................................ AGGGTATGCGACAAGCACGAGTTATCCTCTTATAT 17010 32 100.0 35 ................................ TTTTCTAACGGAATTAGTACTTTATCTCTTAATGC 16943 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.5 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATTGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGTTTGGCGGGCAATGGCGAGGTTGTGGCAGTGTCTAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //