Array 1 1739359-1739051 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR699003.1 Bifidobacterium breve isolate MGYG-HGUT-02469 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1739358 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1739289 33 100.0 36 ................................. GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 1739220 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 1739152 33 97.0 36 ............T.................... CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1739083 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 95.8 36 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CCCTGGGCATGCTCGCCATCGAGCAAGGCAGGAGCGTGAGGTTCCGGCAGACCGCGGAGCTCGTGCCCCAGCCCGGCAAGGCCAAACGCGACGGCGCCCTCGACAGCCTGCTCAGGGACCTCGCCCGTGCCGACCTGATCATCCTCGACGAGTTCGGCTACGTGCCCTTCGACATCGACGGGGCCCGTCTCCTCTACCAGATCATCGCCGGCAGCTACGAACGTCGCAGCATCATCTTCACCACGAACATCGAGTTCAGCAAATGGGGGACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGACGCCTCATCGAATTCACCGGCCCCAGCCGACGCGTCAGCCAAGCCCTCATGTTCGGCAAGACGGACAACCAGTAAAACAAACCACCGGCCGGCACTCCTCATGCCGAAAACCGAAAAAAATTAGTGACGAAACACGAAACACCGACTTGACTAAAAACATCCGAAACCCGA # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGTAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1747279-1744412 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR699003.1 Bifidobacterium breve isolate MGYG-HGUT-02469 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1747278 33 100.0 35 ................................. CGCATGGTCGTGCTCGACCCACCGCACCTGCGCAA 1747210 33 100.0 33 ................................. CGAAGAAGCACATGAGGATGGTGAACGCGGTCA 1747144 33 100.0 33 ................................. CGGCAACAAGTCGGCGTGGAGCGCGGGTGCCAG 1747078 33 100.0 36 ................................. ACGATCCGCTCGATCGCGACGCGGAACGGGACGCAC 1747009 33 100.0 35 ................................. ATGCCAAACGCAACTAATAGTGCGCGCATGGACAT 1746941 33 100.0 34 ................................. CTAGGAAACCGGCGAATGAGAGATAACCCGTGTT 1746874 33 100.0 33 ................................. TCGGACAGGCCCAATGTGGCGGATCGGGAGTCC 1746808 33 100.0 36 ................................. TGCCTGCAGATGCGGCGGAGCACAGTGAATTCCAGG 1746739 33 100.0 35 ................................. CTTCCATATATGAAAAAAGTCGTATCGGCGTGATA 1746671 33 100.0 34 ................................. GACTATGTGCGAGACGATGAATACGCCGAGCAAA 1746604 33 100.0 34 ................................. CAACAGTCCGAGGTCACGGGCTCGGATAAGCTGG 1746537 33 100.0 30 ................................. CGGTTACCGCAACCGCCCTGTATACGAATC 1746474 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1746406 33 100.0 34 ................................. ATATCCTACAGCGTCCACCCCTCTCATCGCATTC 1746339 33 100.0 35 ................................. GATGTATGGGGTATTGCAATCTGCCCGCGCTCAAA 1746271 33 100.0 35 ................................. CTGACTGCCGATCTCGAACAGGTCTGTGACGGTCG 1746203 33 100.0 35 ................................. TACGATCCGCATGACACGGCGCATCTCCTGGTCAC 1746135 33 100.0 34 ................................. CGAGAGCGCACGTAAATCGCTCGGTTCGCCGTAA 1746068 33 100.0 35 ................................. CGCCTGATTACGTGACATTGCAATCCAATATGCTG 1746000 33 100.0 35 ................................. CTTTGTATGCAATCGTATCAACGCCCGTCGCGACC 1745932 33 100.0 35 ................................. GCGTAGTCTAGGCCCCACGCGCCGGTCGAGGCGGT 1745864 33 100.0 35 ................................. AAGGGCCTCGGCTACGGCACGTACACGGTCACCGA 1745796 33 100.0 34 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCG 1745729 33 100.0 35 ................................. TTCGCGGCGCTGCCTGCGGGGATGTGCTCGAACGC 1745661 33 100.0 35 ................................. ATCAGGCGTGAACCCCGCCAAACACGTTCGAATAA 1745593 33 100.0 35 ................................. TATGACACGGTTATATTGAGCACACCGCGACAGTG 1745525 33 100.0 33 ................................. ATCACCAGACGATAAAGACCAGGCTCACTAATG 1745459 33 100.0 34 ................................. AGGGACTTGACGTAGAAGTCGCCGAGGGTCTGCG 1745392 33 100.0 35 ................................. CTCGCCCGGCGGAATCCCGTATCGAAGTAAAGCGA 1745324 33 100.0 34 ................................. GAGCTTTCTGATGGCGCTCGGATCCCAAGTCACG 1745257 33 100.0 35 ................................. CTGTGTGGTCATGCCGCAGGCTTTGGCTATGCGTT 1745189 33 100.0 35 ................................. CAGAACATCGAAACGTACTGTCCAGACTGGATGAC 1745121 33 100.0 33 ................................. ACTGTCTGGGGGTATGGGGGCTAGGAGTTTGTC 1745055 33 100.0 36 ................................. TCTCCACGAAATACGACGGCGGCGCACATGTGCCAT 1744986 33 100.0 34 ................................. AATCCGACGACGCCAGCGGACACGCCGCCACGCC 1744919 33 100.0 34 ................................. AGCACGTTTGCTTTCATAGCATCGGTGAAACCCG 1744852 33 100.0 35 ................................. GTGTCCACCATGCGCAAGGCGGGCGCGGACATGAA 1744784 33 100.0 36 ................................. ATCGCAGGCAAGGGAGCGCAGGACGGCGCGAACTGG 1744715 33 100.0 36 ................................. TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG 1744646 33 100.0 33 ................................. ACCGTGCCCGACACGGCCGGCACGCTGGAATAC 1744580 33 100.0 34 ................................. AGCGTGGAGTGGGAGCGGGCCGGGACGGAGCAGG 1744513 33 100.0 36 ................................. CTCCGGGGATTGAAAAGCGCATGGGACGGCGTGACC 1744444 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 43 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAATGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGGTGTCCATTTTCGCG # Right flank : CATTGTGAGTGTAATCGGCAGTGTTGGTTTTTGTTTTTGTTCAATAGGATTTTGAGGTTTTAGTCACGAAGGTTTTTCGGGTTTAGGCGGAAAGGCATGCCGACCACCCGTGGGCCTTAGCCTGATGGTGCTTCTAGTTCCATTCGGGAAAGGTCCGGAAAGGCAATGATCAGCATGCCCCAGATACAGTCTATCCGTTCGCGTCGCAGGAACGGTGAGTCCATCGCCTCGATAGCGCGCAGCGAGAGGGTCAGCGAGCCGACCGTGCGCAAGTATCTGAGGGTCGACGACCTATCGGCCGGGCCGCCCGTGAGGCGACGTCGTGGTTCGGTGATCGACGAGTGGCTGCCCATGATCGAGGGCATGCTCGCCGAGGACCGGGAGACCTGGCGCAAGCAGCGGCATACCGCGACCCGCATCCATGAGCGGTTGCGCGACGGGTACGGGGCCGGGGTGTCGTTGTCGACGGTGACCCGGACCGTGGCGCGGCTCAGGCGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //