Array 1 5398-307 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBDK01000034.1 Acidiplasma cupricumulans JCM 13668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 5397 30 100.0 36 .............................. AATTCCTCTATTATGATATTTTCCAAAACTTTTTTA 5331 30 100.0 37 .............................. GTTATGACCTTCAATGAGATACTGACGAGTTTTAGGA 5264 30 100.0 36 .............................. TATTTCCATTCCATTCATAGCTTTTGGAAATTTCCT 5198 30 100.0 37 .............................. ATTATTCTCCCTTGCAAACCTCGATGCAATGCTTTCA 5131 30 100.0 38 .............................. TTACATGCACATGGTATATATGAAGATGATTATGGAAA 5063 30 100.0 35 .............................. TCTCTGATTGGAAAAAAGGCTATTGGTGTTAGAAA 4998 30 100.0 37 .............................. AATATACTTTCTTTTGTTAACTGTATTAGGTAAAAAT 4931 30 100.0 37 .............................. TTTTCAAGCCAGACTATACCAGAAGACTGGCCATTCA 4864 30 100.0 36 .............................. AATGTTACCTTAAACCTAAAGTTTTACATGCACATG 4798 30 100.0 37 .............................. CTTTATTTTTCTATGTTTCCACTCAAATTTTATATTG 4731 30 100.0 40 .............................. GTAAGCAGTGAGGAAACTCCTTATTTTCCCCTTAATTCTG 4661 30 100.0 36 .............................. TATATAGCATTCGGGACAACTGAATACAACGCTTTA 4595 30 100.0 35 .............................. GTTCCTCAATTGATAACCTATTCCGTTGATTTCCA 4530 30 100.0 37 .............................. TCCAGGACATTGACAAAAGAGACCTGGAATATTTCGA 4463 30 100.0 37 .............................. TCTGTTATATTCTGCATATCCTGGCTTACTGATACAG 4396 30 100.0 38 .............................. TATTTTAAAACATTTCTCCTGGTCTGGTTTGAATAATA 4328 30 100.0 36 .............................. TCCTTGTTTTTTTCCTGGCTTCTCTTTTTTGGATAA 4262 30 100.0 32 .............................. AAAAAGAGCTCCGTAAGCTTAATCCATACATA 4200 30 100.0 39 .............................. GCCTATTGCATTTGTTATTCCTGCCGGCTCAGATTCAAA 4131 30 100.0 36 .............................. TGTTCCGTTGCCAGAGGGGACACCCGATAATGTCAA 4065 30 100.0 36 .............................. ATAGACGAGGAGACGCAAAACGAAGTGCTCCCTAAA 3999 30 100.0 36 .............................. AAGGAAGAACAGGCCATAAAGAAAGCAGATAAAAAA 3933 30 100.0 36 .............................. CTCTGTAGTTTTTGAAGAGTCAACATGGGCATAAAA 3867 30 100.0 36 .............................. TTCTATGGCATTGGTGCACCACAACCATGGATGGGC 3801 30 100.0 38 .............................. CATCTGGTTGGCTCAATATTATAGTAGAGAGCCTTTAG 3733 30 100.0 38 .............................. AAATAATGTTTTTAAAAGGTTTGAAAAATATAAAAATA 3665 30 100.0 39 .............................. ATTTCCTTCCAGGTACCTGCTCCTCATTTTCATTATCTT 3596 30 100.0 37 .............................. ATATTGTTTCAGGCAGGAATGAGCCGCTTGAATTGGC 3529 30 100.0 38 .............................. TTAATCTCATTCTTCACCTCATCGTTTATATACTCCCC 3461 30 100.0 35 .............................. ACAATTCCCTGAGCGATAACATTCCCATTTACACA 3396 30 100.0 35 .............................. TATTAACAGCTTTTTTCTCCCCGTTGGTTACCTTT 3331 30 100.0 35 .............................. GGGGTTCAACGGAAAATCCCCCCCATACTACTAAA 3266 30 100.0 35 .............................. ATGATTTTTTATCTTCTTGCAATGCTGCTGGCTAT 3201 30 100.0 38 .............................. AGGTTTGCCGAGCCGGTTGTGGCTGTCGGCTTCGCTAT 3133 30 100.0 36 .............................. TATATTTTTGCCGTTGCCATTTTCAAAATATTTTAA 3067 30 100.0 34 .............................. AAGATAAATAACCATGCCCTCAAGGTGTTAAAAA 3003 30 100.0 38 .............................. GAATATGTGAAGTTCGCCATTGGGTTCAGGAATGGAAG 2935 30 100.0 38 .............................. TTAATTGGCAGATCAATGGTTGAAGTCCCTGAATTTGA 2867 30 100.0 35 .............................. TCCTTCCGGGAAAAACAGGATAGTCGCCATCGAAC 2802 30 100.0 37 .............................. TTTGGGATGGTTGCGCTGGCAATGTCCGCCACTGTTC 2735 30 100.0 37 .............................. CTCTTTGAGGAAGAAACGGGTTTTGCAGTTCTAAAAT 2668 30 100.0 38 .............................. CGAAAGGAAGGGGTACTCAAAGAAGAAGGCTGAGTATA 2600 30 100.0 36 .............................. TTTCACGGAAGTTTAAAAATATTGACCTTGAGATTA 2534 30 100.0 38 .............................. TTTTACCATTAGGACATAAAGGTTTTCATATGGCATAG 2466 30 100.0 36 .............................. CAGAAAGGAAGGACTTTGCAAAGCCAGTAGTTAAAA 2400 30 100.0 36 .............................. ACTGATGACTTTTGACAAGACAGCATGGCAGAGAGA 2334 30 100.0 38 .............................. AAGTAATGTTTTTAAAGGGTTTAAAGAGCATAAAAATA 2266 30 100.0 38 .............................. AAAAAATATTGCGGTGCATGACGCCATTTTAATCGATA 2198 30 100.0 36 .............................. GAAGCGTCTGCTGCCTTCTTTAGTCCCGGAATTATA 2132 30 100.0 37 .............................. TTAAAATTTAAATAATTTTTACCATTTCTTATAATTA 2065 30 100.0 37 .............................. ATTAATTCATTTGTAAGATTGGTATCTACTGTATTGA 1998 30 100.0 36 .............................. ATGTTCCACCTTCTAAAGTTCCAGGAACAATAACCA 1932 30 100.0 39 .............................. ATTTCTGAAGGTCATCTATTTTTTTAAATTCATCCTTTG 1863 30 100.0 35 .............................. ACAAATGCGTCATCTATTCTTATGGATGGTTTTTT 1798 30 100.0 38 .............................. GCTTAAGGCTGCTGCTCCTAGTCCTATCACTGATAATA 1730 30 100.0 38 .............................. TCGAATATTCCTTTATATCTAAACTTGGAGAAATACAT 1662 30 100.0 36 .............................. TTTGTAGTTATGGCCGTTATCGTTGGTGGTGTTATA 1596 30 100.0 36 .............................. ATAAAAAATGTCATTACATAGTGTTTTAGCAGATAA 1530 30 100.0 37 .............................. AGAAAAAACATGTTTGATGTGGCACAAATAGAGACAA 1463 30 100.0 34 .............................. GTTCGATGGCGACTATCCTGTTTTTCCCGGAAGG 1399 30 100.0 35 .............................. TTTTCAGATAAAGACATTATGGAAGCCCTACTCGA 1334 30 100.0 37 .............................. AAGGAATATACGATTTAGACAATATCACGGAAAATAA 1267 30 100.0 36 .............................. TCAGGCAAAGCAGACAATCAGGCAAATGTAGACTTA 1201 30 100.0 38 .............................. GGGGGACTATTATATCCCTTATGTCTATGTTATTTAAA 1133 30 100.0 38 .............................. TTCTTGAGATATTTCGCTCATAAAGTCTTTTGTCATGC 1065 30 100.0 37 .............................. GTTACCATTCTGGAGATAGTGATTCTAAGGGCGACGG 998 30 100.0 38 .............................. ATTGATATGCAGGTATTCCCCTCTTTTGAAAGTTTCTT 930 30 100.0 35 .............................. ATGAATATGACAATGATAGCATTGACGAAATACAA 865 30 100.0 34 .............................. AATTATCAGCACCTTTCAGTTTCTGTGCTACTTC 801 30 100.0 35 .............................. GAATTAACATAAACAGAACCCCAGCCCCAGAAATG 736 30 100.0 35 .............................. AAGGTATCGTTACCGTAAACACCTATGCCCTTTGA 671 30 100.0 36 .............................. TTTCAGGATATCGGCATGGCTGGAGAGGATTTTATA 605 30 100.0 36 .............................. TCAGTCCTTATTCCGTCTTCAGTATCGCATTCTATA 539 30 100.0 39 .............................. GAATATCTGCTTGAGTTTGAACCTGAAATTGCAATGCCA 470 30 100.0 38 .............................. TTTCTAATCTTTCAAGATTTTTTAAAGATGTTTTATAA 402 30 100.0 36 .............................. AAATAAAATGCTGATACAGGTACACTTTACAAAAAA 336 30 93.3 0 .........................A...A | ========== ====== ====== ====== ============================== ======================================== ================== 77 30 99.9 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : TTGAGGGAAACTGTTTACGTTTCTTCCTTGAGAAGGAAAGTTTCTAATAAGTTTCTAATACGTCTTGAGATATATAAAGTTGAAAAACAGATAATGGAGAATAAACAATACAAACCATATATTATGAGGGATTAAATTGTGGATTATACTTACATATGATATTAATGAAAAAGGGTTGATAAAATTAGAAAGATTTCATTGCAATATTTAATTAGGATTCAAAATTCTGTATTTATAGGAGATATTGGATGGGCAAGCTTAAGAAATTTTAAAAGAAAGATTAAAAAAGAAATTGTTGAATCAGAGGATTCAATACAGTTTTTATTCTTAGGGATGAAAAGCTTGTAAAGAGAATAAAGCTTGGAGTGTCATATGAATTCAGCAATATAATTTAACATATGATCAAACCTTTAAATACTCTTTTCCAATTATGAACTTTGAGTACTTTTTTATAAAATTGTCATAAGTTTTTTATTTATAATACAGATTATCTATAACGG # Right flank : ACGAAATGAATATTCCACTGGATTATCTTCAGATATATCTGCATTAAAATTAACCCTTAATAGATCTATTCTATATTTATTTAAATCTGTTTAATTTTAAACTATTGTAATAATATAAACACCAGAAAGAATAGTCATTCTAAGCGTTATTTAAATATAACCATTTCCTTGATAAAAATATTATGCTCGATTAAAACCTAAAGTAAATTAAACTAGAAATTATTCTAAATATTTTAGTAGAAAATTTTATAATTTTTACTTTCTTTAAAATGGGGTATAAAAACAAAATTACTTTTAAAAATTTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 14887-15045 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBDK01000034.1 Acidiplasma cupricumulans JCM 13668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 14887 27 96.3 39 .......T................... AAAAATAATTCCATATAGTGATTGAAATGTAATACCATT 14953 27 100.0 39 ........................... TAGAAATATGTCATTAAATGAATTTATATAAATAGCGTG 15019 27 92.6 0 ........................TA. | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 96.3 40 TAAAATAGAACCTTAATAGGATTGACA # Left flank : ATTATTATAAAACTCTAAATTCATTGCCTAATAAGACCCGATATATAATAAATATAAGCGCAGGTCCATCCGTTTTTGCTGCAGCAGGGATGTTATGGGCTTTACAACATAATTATTATGTTTCTTATAGCGTGGAGCATTATGAACACAGGCAATTAATTTCCTGCGTATTTAGGAATATAAATATGAGATCAGTATCAAATTTAACATTTAATACAAATAATGTTGATAAATTTATAATAGAAGCACTTAAAAATGGGATGAATAATACAAATGGAATCAGGCTATTTTTATTAAAAATTATAATTATCAGACTGGATTAAGAAATATCCAAGAACATATAAAAAACTTGAAGAATTAGGGCTTATAAGATTGAGTGGAAATAAAGGCTGGGAAATCAATTTTTCAGATGATTTAGAAGCTTTAGGCTATACTGTTCCTAGCTTTTTAAAAAGATAAGTAGCCTTTAATAATTTTTAACGTTATATGGAATATAAAGT # Right flank : AAGGCTTTTCCCATATAAATTATTTATGTCATCTGTTTGTATAAGTCTTATAGAACCTCCTTATAATTATTGTGTGATTACTTTATTGTTAAACGGAATCCTGGTATATCATACTCTACTGATTCCGTAATACTTAATACAAATACTATTATTCTTTATTTACTGTTTCCCTTCTTAAATCGAAGAATAGTCCATCCAACATTACAGCAATATACCTATTATCAGGCTTTCGAGTAACAAATTTATTTACCCCTTCCAATGTTAAATCTGTTATTTTTGATATTGATGATGAATATTTATTATTGAATATATCCTTTAATATATTGGTATTCTTCTTTTTGACGAACCATTTAAATACATTGATGTTATAATTTCTCACGGCATACTTTTTGATTTAATTCTATTATGGGACTGTGGAATTTATTAGCCACGTTTACTGGTTTGATAAATCCTTAATCTCATAGTACTTTGTTTTTATATTCGTCTTAGAATAAACCTTT # Questionable array : NO Score: 3.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAATAGAACCTTAATAGGATTGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //