Array 1 15442-17450 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACK01000014.1 Actinobacillus pleuropneumoniae serovar 1 str. 4074 Apleuro.Contig128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15442 28 100.0 32 ............................ TTGTGCCTTGGCGGATTGCTCAAGCGTTTGCA 15502 28 100.0 32 ............................ ACGAATAAAGCCGATCCAATCAATATGGGCGG 15562 28 100.0 32 ............................ ACGGATTATCCGAGTAATTCATCTCGATAATC 15622 28 100.0 32 ............................ GGCAAAAGAAATGCTAGAAAACGCAATCAAGC 15682 28 100.0 32 ............................ AGGCAAGCCCGATATGATCACAAATAGCCTTG 15742 28 100.0 32 ............................ TTGCCACTTTTTAACTCCCTCAATACGAGGGA 15802 28 100.0 32 ............................ CCCGAAGAATTGATTTTAATCAATTTTATAAA 15862 28 100.0 32 ............................ TCGTCTTGCGTGATTTGAGTGCGCTGAGAACG 15922 28 100.0 32 ............................ GCGATAACGAGCCTCACCAATAAAAACCTGAA 15982 28 100.0 32 ............................ TCATTTTGTGATTGGCGAGAAATTTATCAAAA 16042 28 100.0 32 ............................ TGATGAAATTGATAAAAGTTACCAGTCAATGG 16102 28 100.0 32 ............................ TTGTAGCGAATTGAATTTAAAAGCTGTTTAGT 16162 28 100.0 32 ............................ AGTTACAACTGTAATCAATGCTCGTTTTTCGT 16222 28 100.0 32 ............................ TCCTGAAAAAGCAAGCGGAAAAGCCAAAGGTA 16282 28 100.0 32 ............................ ATAATGCTGCACATCTGAGATGTGTCCGTCAT 16342 28 100.0 32 ............................ TCCAAGTGAGCCAGCTACAACTAAGCCAAAAT 16402 28 100.0 32 ............................ AAGTAGTTCTTGGCGTGCTTTAACGATTAAAT 16462 28 100.0 32 ............................ TGAAAAAACCTACCAACAAGCAACAGTTACAG 16522 28 100.0 32 ............................ AAATTGTGCTTATCTTTAACTTCACCGGTTTC 16582 28 100.0 32 ............................ TAGCGGGTGCAATCCACATTGCAGAAATCAAG 16642 28 100.0 33 ............................ TATTTAAAATAGTCTGATGTTGAATCTTCCGAT 16703 28 100.0 32 ............................ AGCAGAAAGCTCACACGGAATGTGGAATTTTT 16763 28 100.0 32 ............................ TTTGGGTTTCGAGGGTATGACATTATTTTTTC 16823 28 100.0 32 ............................ TCTATGCCGCAAGTGCGGCGTATTCTACTCTT 16883 28 100.0 32 ............................ GTGTAAAATCCCATGACGTAAGCGAACCGCTT 16943 28 96.4 32 ...................A........ TTATGCTGATAAAATGATTCTTAAAGAAATAA 17003 28 100.0 33 ............................ AACAAGCACGTATTAAAAGCGATTTTATCAAAT 17064 28 100.0 32 ............................ ATTCGCCCCGACGATAAATTTCTAACTGCTCC 17124 28 100.0 32 ............................ AAATTGTTGTAAAGACTCAACCTGATTACGCT 17184 28 100.0 32 ............................ ATTTAAAGGAGCGGAAGATACCTTGTGTAAAG 17244 28 100.0 32 ............................ GCCCGAACAAGATTCAATACTCTATTGATACC 17304 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 17364 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 17424 27 89.3 0 .....................-C.C... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.6 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTGCCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGCCAAAGTGCTATTCGCCGTACAGAGAAATTTTTAACTCAACAAGGGAAATGGACCGAAGATGTTCGCAAAGAGATGCTAATACATCAACAGAATCAAAAAACATTTCCCCATGTAAAACTCAAGAGCAGTAGTACTAAGCAGCATTTTGTATTAGCAATACGACAATTTCGTTTAGCAGAACCCGCTTCAGGCTTATTTAACGCATATGGATTAAGCCAAGTAGCAACCGTTCCGCATTTCTAACCCATTTTATAACCCTTTTTTCAAGAGAATTCATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : ATCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTGTCAAAAGCAGGGGTTATGGTCGGTTTTTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGCCCCGTCGAATATCTACAGCAATGGTGTCGCTTTTGGTTTGACGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //