Array 1 9585-9735 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJC01000127.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001371 CFSAN001371_contig0126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9585 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 9646 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 9707 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCAGCTATCGATGAGATGAATAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41340-41976 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJC01000025.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001371 CFSAN001371_contig0024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41340 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 41401 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 41462 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 41523 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 41584 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 41645 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 41706 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 41767 29 100.0 31 ............................. GATGATCGTTTTTTCGTTACGTCGCGCAAAT 41827 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 41888 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 41949 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48374-46513 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJC01000026.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001371 CFSAN001371_contig0025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48373 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 48312 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 48251 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 48190 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 48129 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 48068 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 48007 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 47946 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 47885 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 47824 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 47763 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 47702 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 47641 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 47580 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 47519 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 47458 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 47397 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 47336 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 47275 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 47214 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 47153 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 47092 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 47031 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 46970 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 46909 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 46848 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 46787 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 46726 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 46665 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 46603 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 46542 29 96.6 0 ............T................ | A [46515] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTTTAGAAGAGCGCGCCCGACAGGAATATG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //