Array 1 34198-33689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGBP01000036.1 Yersinia similis strain Y228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34197 28 100.0 32 ............................ TAATTGTCATTTTAGTCAAGTCGCATCGTAAA 34137 28 100.0 32 ............................ TTATTAGGATTCATATTTCCAACATCCATTAA 34077 28 100.0 33 ............................ TAATGAGATTAAGGCATCAGTACAATATATGAA 34016 28 100.0 32 ............................ AGAGAGATTAATAAGATGACAATGAAAGCAGT 33956 28 100.0 32 ............................ ATCATAGCGCCTAATTTTCGAATATTATCAGA 33896 28 100.0 32 ............................ GTCACAGAGTACGTGCGACTCGCTACGGATAT 33836 28 100.0 32 ............................ AGCTTCGAGCCACTAGAGCACGACACTCATGC 33776 28 100.0 32 ............................ AATCTACCTGCTAGTCAATATCTCCCGCGTAA 33716 27 85.7 0 ...................A.A-.T... | C [33692] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCGCGGCGCTGGAGGGTGGCCAGAACTACACGGTGTAGCACCAGGTGGATCACCACAGAAATCAATAAGATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCATTGCTCCTTTAAAACATCAATCTGACGAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCAAAGGGGGAGACATATTTATATGCTGTGGTTTATGACATGGTTTGTGGGATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTTCATTGTAGTTACCGGTGGTCTAAAAAAAGGGTTTTTTCCCTATTAGCGAAAGAATTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TCCTGGACCATGCTCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGATAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAAGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAGCTGCATATGTGTTGGCTGCTTTCGTCCTCCCAGTAACTTACTGGTGTAAGCTCTTGGGGATTTACTCAGTTGCCGCCTTCTTGCAACTCGAATTATTCTGAGTATAGAGAGAGTTATTTTTTGGAATAATATCCACTTGGTACCTAAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCTCTAAGGAGTTTTATTTCCATGGAAAATGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGGGGGCGAGTTGAATATGTCACCGATGAAGGTAAAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 116830-117998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGBP01000002.1 Yersinia similis strain Y228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 116830 28 100.0 32 ............................ TTGATTGAAGCTATGTAATTGGGCGCTGCATC 116890 28 100.0 32 ............................ AATAATTAAAGCCTTAGTAATGGCTCTAACTG 116950 28 100.0 32 ............................ AATTAAGGAACTGCCAAGGCTCATCAGCCTTT 117010 28 100.0 32 ............................ CGGAAGCATTCGGCGAGCGAGAACTTAACATT 117070 28 100.0 32 ............................ ATCGATAAAGGATCGGAAAGACGGCAGAAAGA 117130 28 100.0 32 ............................ TGACTGAACACAGTGAACCCGTACAGTACCCA 117190 28 100.0 32 ............................ TATGAAATGTATGTAGAAAAAGAATGGGTGAT 117250 28 100.0 32 ............................ ATTTCATGAGATACGGAGTTTAGCTTCACGAC 117310 28 100.0 32 ............................ AACGGAAGAACAATGGATGGCGCTGGCTGCGT 117370 28 100.0 32 ............................ GCCCCAGGTGCCACCCAGTTTTTCCCAGTACT 117430 28 100.0 32 ............................ AGCAGGAACAGACTGTTGTGACGGATAATAAC 117490 28 100.0 32 ............................ AAACCGCCCAGATTTCTCGCATTGAGCAAATA 117550 28 100.0 32 ............................ AAGAATGTTTAAATGGGATAAGGACGGCAACT 117610 28 100.0 32 ............................ AAGTAACGCAGGTTTACAGCTTCACCGCCCAC 117670 28 100.0 32 ............................ TGACTGCTAATATTAAAAAAGAGCATTGGTAT 117730 28 100.0 32 ............................ GTCAGCGTCATGACAAACGGGCAGGGGATGCT 117790 28 100.0 32 ............................ TGAAAGCCATAAGTTGCAGGGCGGAAGTCGTA 117850 28 100.0 33 ............................ TGACTTCTCACCCAATACGGTGACTTCCGAGGC 117911 28 100.0 32 ............................ CTCCCGGTTGGGTGGGCGTTCGTTGTGTGAAT 117971 27 85.7 0 .................T...CC.-... | T [117997] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCTAGAAAAATCAATCGAGGTGATGAACCCTGGCAGGTAGACTATCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCGCACCAAGCAATGCCGTACCTAATCCGCAATAGACGATACCGCGTAACCGCACCAATTAGCCAAGAGTAGAGACCCACAGCCCCGGCAATGGAAGCAATTTGGCTGGCGGCAACCAACCGGAACCCTAAATAGTGCCCATTCCAATAAACGTCAGGTCGATGAGCGCCAGCTGTTTTTTAAATTTGCCCTGGACAGGCCAGAAACATTGGCCGCAGCTCCGCCGTTCTCCTCAGAAGAATAATCATTAGGATCCGGTTACATCCCCATAGATTCTTGTGACCCTCTTTTTTCCACTATTACTAACTTATTGATTTTTATGCTTCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTTCGCAATTGCTAATTGATAAATATCAGCTTATCCGTATTATCTTACTT # Right flank : ATCTCAGCTATCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGTTCAGGGCTAAGCGCTGAACGGCGATGCTGTAACCAGCGCTGTTGCTCACGGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCGGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCGGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGTGAATGGCTCCGCTTGTGCAAACAGCGCGACCACTCTTTCACGCACCTGTGGGTTTTGACGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //