Array 1 325-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNB01000034.1 Klebsiella pneumoniae strain VRCO0388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 324 27 93.1 32 --........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 265 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 204 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 143 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGAGTGACAGAGAGATTGACCGCCTTGTTTTGTGTTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182357-179220 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNB01000003.1 Klebsiella pneumoniae strain VRCO0388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182356 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 182295 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 182234 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 182173 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 182112 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182051 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181990 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181929 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 181868 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 181807 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 181746 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181685 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181624 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181563 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181502 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 181441 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181380 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181319 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181258 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181197 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 181136 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 181075 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 181014 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 180953 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 180892 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 180831 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 180770 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 180709 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 180648 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 180587 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 180526 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 180465 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 180404 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 180343 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 180282 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 180221 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 180160 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 180099 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 180038 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 179977 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 179916 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 179855 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 179794 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179733 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 179672 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 179611 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 179550 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 179489 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 179428 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179367 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179306 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179248 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 52 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //