Array 1 228293-228748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDNH010000004.1 Escherichia coli strain 18FS24-1 NODE_4_length_246992_cov_37.631418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228293 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 228354 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 228415 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 228476 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 228537 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 228598 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 228659 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 228720 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCGGCTTGTTTAATTGCGTGGAACGTCTCAATTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCAGCGGGGATAAACCGACGGCGTGGATTGAGGGACGGGTATTTGGTCCGTGTTCCCCGCGCCAGCGGGGATAAACCTAGATCGCGCCACGAGGAAACGAATATGAACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCCGATTTCCCTGGCGTCAAAAGCGGTGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCTTTCTCAGTCATCTGGCGCTCAACGCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGCAATTGCCGGAGTTTTACTAATTGCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATTTCATTAACGGCGCTCCCCATATTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228881-229763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDNH010000004.1 Escherichia coli strain 18FS24-1 NODE_4_length_246992_cov_37.631418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228881 29 93.1 32 NN........................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 228942 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 229003 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 229064 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 229125 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 229186 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 229247 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 229308 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 229369 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 229430 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 229491 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 229552 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 229613 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 229674 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 229735 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCTGGGGCTGCACATTGACAATAAACCGCCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGACTTGATTACCGCTATTTTCTGACGATTTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGATAATTTACGCTATTCAGCGGAGATGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGCTATAGTATCATATGATTTCTATTTGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCTTGTTTAATTGCGTGGAACGTCTCAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGCTATAGTATCATATGATTTCTATTTGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCTTGTTTAATTGCGTGGAACGTCTCAATTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101306-101453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDNH010000001.1 Escherichia coli strain 18FS24-1 NODE_1_length_643068_cov_31.307734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 101306 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 101366 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 101426 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTGTTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 128454-127450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDNH010000013.1 Escherichia coli strain 18FS24-1 NODE_13_length_137415_cov_35.954504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128453 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 128392 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 128331 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 128270 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 128209 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 128148 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 128087 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 128026 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 127965 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 127904 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 127843 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 127782 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 127722 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 127661 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 127600 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 127539 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 127478 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //