Array 1 2058476-2059433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066192.1 Bacillus cytotoxicus strain E17.4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2058476 36 100.0 30 .................................... TTCGATGTTTATCCATCCACTCTTCGACAA 2058542 36 100.0 30 .................................... TGTTTTGGGTTGCCGATGTAGAAGTAAAAA 2058608 36 100.0 29 .................................... TACAAAAAGTGACTGAGGGGGCTTATAAC 2058673 36 100.0 30 .................................... AGTGCAAGCAATCAAAAAAGGTGCAATTGA 2058739 36 100.0 30 .................................... TGAAAATTTCGGTAATGTAAAGGTGTTTAG 2058805 36 100.0 30 .................................... TCAGCACGTCTTTATTACAGGACAAACGGG 2058871 36 100.0 30 .................................... ATTCCAATCGATGTATGGTGTGAGGAAGCT 2058937 36 100.0 30 .................................... GGTAGCAATCTAAAGCTATCATGTAGTATA 2059003 36 100.0 29 .................................... TCGTCTTCCTCTACTTTTGGTTTCGGTGG 2059068 36 100.0 30 .................................... TTTAATGATGTTGATAAGTTGCCCCGCATA 2059134 36 100.0 30 .................................... CTACTAAAGTGAGTAGTGCGGTTGCTAGTG 2059200 36 100.0 30 .................................... ACTAAAGTGAGTAGTGCGGTTGCTAGTGCT 2059266 36 100.0 30 .................................... CTACTAAAGTGAGTAGTGCGGTTGCTAGTG 2059332 36 100.0 30 .................................... ACTAAAGTGAGTAGTGCGGTTGCTAGTGCT 2059398 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT # Left flank : AGTCCGGTAATCGTGGAGGAGAGAGGAGATTCCCCCTCGACCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGTTCAATTAAGTCTGACGAATCATTGAATATCTATTACTCAAACTTTTAAGACCTAGATATCCCCAGTAGGAATTGTCTAGGCTTCTTTTCGTATGCTGTCTGTTTGGCGATACTCAAAAATTGGAGTTTCTTTCTCCTTACCCTTGATAATTTTTATTGTTTCCATATAACCATTCGGAGCCTTCTTCGAATCCACTTGTCTCGTTCTTTACATATAGACGGCGTGTCGCTTAATGCATTATATCCACACCATCCAATTAGATATTTGTAGATGGTCAACCAAATTTGCCCCACCTTTGTCACTGAAAACTGACCCACCTACTCTTCCTTCGTGACTAATCGTACTTTCATTCTGTAGCTATTTCCGTTAATATTAAAAATATGACAGTACTGAACAAATATTTATTATATGCATTTTTAA # Right flank : TACATGCACCGAAACCTCTTGATATTCCTCAGTTTCAAGGGGTTTCTTTTTTAAAAAAACGAGTTTAAAAATGCTCTTTTGGTTATTTTCGTGCTAAATTTTTTTCATATTACGTCAAAACAAAAAACACTTGCTAAAATTGCAAGTGTTTTTTGTTAGAAAAAGTCCGTTTTATTTGTTCCTAATTTTTCATCAATGGTTTGAACACCAAGTAAAATATCCATACTTTCAAATTGCTTTTCTGTTACTTTTAATGAACGGATTGCTCCATTTACATTTGGAATGTTTTGCCTAAGTCTTCTCAAATGTTTTTGAGCACCTTCTTCTCCATTACAAACTCTTGTGTACACAGAAAATTGCAGCATTGTGTAACCATCTTTTAATAAAAATTTTCGGAAACGGGTGTAGGCTTTTCTTTCAGCTTTTGTCATCACCGGCAAATCAAAGAAAACAAGTATTCTCATAAATTTACTCATACGTATGTTGCCGTAATGCAATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 2189632-2188881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066192.1 Bacillus cytotoxicus strain E17.4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2189631 29 100.0 39 ............................. TTATTTCTTTTTTTGTTGTATCTATTTTTAGCGAATCAA 2189563 29 100.0 36 ............................. CGATATGAACCAAATCAAAAAAGAGTCATGGAAGCG 2189498 29 100.0 37 ............................. ACTGATGACAAAAACGTTTTTACAGCTAAAGTTGTTG 2189432 29 100.0 36 ............................. TTGATTTAAAATATAACGTACTTTCATAGATAAAAT 2189367 29 100.0 35 ............................. CCATCTTCATAGTTACCAGTTGTTGTGATAACAAC 2189303 29 100.0 37 ............................. GTCAAACAACGCAAATTATTGACTCTATTGCGGGCAA 2189237 29 100.0 37 ............................. AATAGATGTATGTAGGTATTGGTTGGAACAGAACGGG 2189171 29 100.0 36 ............................. AAACGCTCTAGTGGATGACCAAAAGGTGGCAGAAGA 2189106 29 100.0 37 ............................. CGGTTGCTGTATTGGCCAATCCTTGAGCTGCGTTTTG 2189040 29 100.0 36 ............................. GTTATTTTTTGATAGTCTTCAGCACATACCATTCGC 2188975 29 100.0 37 ............................. ACAGCAAAAATTATGATTCACAATGCTTCTATGTGGA 2188909 29 93.1 0 ....................A...G.... | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 99.4 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGGTGGTAAAAAAATGTTTGTTATAATTACTTATGATATTGGAGAAAAAAGAGTAGGAAAAGCGTGCAAGAAATTAAAACAGTATTTAACTTGGACGCAAAACTCTGTTTTTGAAGGAGAATTATCTAGGACACAACTCTTAAAATGCTTAGCTGAATTAGATCAGATTATAATATCGAGTGAGGATTCTATTTACTTATATGAAGTAAATAATCCACGTAATATAAAGAAAAAGGTATTTGGTATTGAGAAAAGTTACGAAGAGCTATTTCTCTAAACACGATTTTATAATATATTAGGAGTAGTTTTTTTCTTATTAGTGAGAAGTTTGCAGTGCATCGTTTTTTAGCGAGTAAACTGCCAACCTCTTGTCTGTTAAAGGATGGAGCGTATTTTTGAAAATACTTTTGAAACACGACTCAACATCCGCTGCAAGATTTGGAAGTCTTAATGTAATGTGTTCCTTGATTTAAAAGGGATTATAGTGTTTTTTTATAGGG # Right flank : GCAGTTTTCTTATGGTTAAATAACCCATGGAAACAAAATTAGTCGCCATTTATGCTTATCTGAGCGGTATAGAACCTTTTAAAATAGTGGCTAGTTTTTTAGAAAAGAAAGAAGTTATCGTGAACGAAACTAGCTCCTTACCCGTAATTTCGTAGGTTAATTTGGTTACACTGAATAACTATAAAAAACAAACCAAATCAGAGCTACATTACGAAAGGAGCTAGTTTATTATGAAGGATACCACAAAATACGTAGGTTTAGACGTTTCAAAGGAAAAAATTGCTGTTGCTATCGCGGATGAAGGAAGAGAAGAACCTAGATATTTAGGAATGATCCCTCATACACCTGAATCTCTAAGAAAGCTGATAAAAAAATTAGGTGCCGTTGAACACCTAAAAGCATGCTATGAGGCTGGTTCAACTGGCTATGGGATTTACCGCTTACTTTTCAGCTTAGGAGTAGATTGCGCAGTGATAGCTCCCTAAAAACCTGGAAATCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2199780-2198960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066192.1 Bacillus cytotoxicus strain E17.4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2199779 29 100.0 37 ............................. AAAGTCGAATCGTTGTGGGTAGACTGTCCACGACTTG 2199713 29 100.0 37 ............................. ATTTTTCGCGAGTTTATTTCACACTTTGAGAAAATAA 2199647 29 100.0 38 ............................. TTGACACATTACAAAACACCATTCCAATCTCGGATTCA 2199580 29 100.0 39 ............................. TCATTGCTGATGAAAATGATACGTGACAGGTTTGTGGTA 2199512 29 100.0 37 ............................. AAAGTCGTATCGTGGTTGGTAGACTGTCCACGACTTG 2199446 29 100.0 37 ............................. CGTCTTGCAGAAGTTAATCCAAGTAAATAATCAACGG 2199380 29 100.0 35 ............................. GCGGTGAACTTGTCCAATTCGGAACCAATGCGACG 2199316 29 100.0 37 ............................. AGCGTTACCTCTTTACCAGTTTCACGACCACGCTTTT 2199250 29 100.0 36 ............................. TATAAACGTGGCGGATTTACGCTACAACATAACATT 2199185 29 100.0 36 ............................. TCGGATTTTATAGATTTATTTTTGTTTAATGAGTAC 2199120 29 100.0 36 ............................. GTAATTAGCGCAGGCGGAAAAGAATTTGATGAATTA 2199055 29 96.6 36 ............................T CCAATGTATTCAATGGTTTTTGGACATTGTTAGAAA 2198990 28 93.1 0 ....................-.......A | AGA [2198964] ========== ====== ====== ====== ============================= ======================================= ================== 13 29 99.2 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : CGTTCTTGTGAAAAAGGTAAGAAGAGGAGACGAAGAAGTCGTTATTATGATTCGTTGGGAATCTGAAGAAGCATGGAAAAATTGGGAGACAAGCGAAGAACATTTGGCTGGTCATCGTGCAAATCGCGGAAAACCAAAGCCAGAACATATTTTAAATGCTGAACATGCTGTTTATTATGTGAAAGCAACGAAATCGGCTTATCAGCAATCATAATGTGGATGAAAAGGGGGCGATTTAGCCCTTTTTTTAATGATTAAAGAATTCTTTTCTTAAATGTAGTTTTGTATTATATTAGAAAATAAGAGTGTACCTATACCAATACTCATTTTGCAGCATATCAATTTTTGAAAGAAAGGAGTCAAAACCCTTATGTTTCAAGGGATAGACTTTATTTTTGAAAATGCATATGAAACAAAACTAACAGTGTGCTGCAAAACTTTCAGTGTATTATATAATAAATGTATTGATTTTAAAGAGAATTATGGTGATTTTTTATAGG # Right flank : AACTTCAGATGATAATAGTCCTTCTAGGGCATAGCTATCAACTTTAGAGAAGTGCTTCCCCTAAAAAAAGTATCGGGACACTTTTTTGTAATCTTTGAATGCAATCCTGGATTTTGGGTATATTCAAATAGAACTTCCTATGATATATATTTTATGGCGCTATTTGAAGCCGATTCGCTGATTTTTCTATGTTTTGTTTACTGATAGCTTGAAAGAGGTTGCTAAGTACAAAAAAGTTGCGGTGTATATTTTTTTGATAGATTTGCACCATATAAGCATATTTCAACTTACTCATTTTTTCCTTGTGTCTCTCATAAAGGTCTTTGTAGTTGATAGGTGTAACGCTTGCAAATAAACATAAACGCAAGGAGTATAAATTTATTTTAAATAGAAGTTCTATTTGCTGTCGTAATGAATAAAAAGCATACACTTCTGTGAGAGGATACTGAAAAATGGTGGTTTTGAAAAATAACACGCATTTTATCGAAATGTTAAGGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //