Array 1 96801-95231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQV010000026.1 Azospirillum sp. SYSU D00513 NODE_26_length_108281_cov_29.001895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 96800 32 100.0 35 ................................ CTTTTCCACGAGGCGCCGGACGATGTAGTCGGTCA 96733 32 100.0 33 ................................ GCCTTTGTCCAGCACCTCGTCGGGGATCGCGGA 96668 32 100.0 34 ................................ CCGCCATCAAGACGACCTGACGCCGCGCGCCGCC 96602 32 100.0 36 ................................ CAAGTTTATGGGCTCCAGCGACAACAACATCATCCA 96534 32 100.0 36 ................................ TACCAGACCGGCAAGATGCCGCCGCTCCTGCCGCAT 96466 32 100.0 33 ................................ TGCCCGATGGCCCAAGCCTTCACGGACCAGGGC 96401 32 100.0 35 ................................ GGCGCGTTGCTGGCCATCGTCACGGCGGGCGACCT 96334 32 100.0 36 ................................ TCCCTTGCGCCCATTCATCAACGCTTCAATTAGCTC 96266 32 96.9 35 .......................T........ GCCAGATTCTCCCAGACGCGCACGGCGCCGCCGCC 96199 32 96.9 34 .......................T........ ATGCTCCTCAATCTGCCGGGATTCCCATGCGCAC 96133 32 96.9 34 .......................T........ CTCCGGTTTCAGCCCCTGTATCAGCCCTTCCATT 96067 32 96.9 34 .......................T........ ATGTCATAGGGGCCGCCGCCGCCCCACGTTGCTA 96001 32 100.0 35 ................................ CTCATGAAAGCCGACTTGCGCCCGATCTCCTCCGA 95934 32 100.0 35 ................................ CGATGCAGGCCGAAGTCCTCGGCAAGCGTCCGCTC 95867 32 100.0 35 ................................ GGCGGCTTCACCACGCTGCCCAGCCCCGCCTGATC 95800 32 100.0 34 ................................ GGGACCATGATGGCGCTCGGCCAGTTCGGCGTGG 95734 32 100.0 37 ................................ CGACAGAGCAGCTATTACCGCGTGGAGGTCTGGGAGG 95665 32 100.0 36 ................................ AGGTCCTGCCGTGGGGGCCTGGATGGTGCGTGGCGC 95597 32 100.0 33 ................................ GGCCACATAGGGCGAGGCGTGCGAAAGTGTCGC 95532 32 100.0 34 ................................ GTCAAGCGGCAGACCAAGCAGGAGCTGGGCCGGT 95466 32 100.0 36 ................................ CTCGTTTCAGGGGTCCGGGCTGTGAAGCCGCAGCGT 95398 32 100.0 36 ................................ CGCAGATGCCCGTTGAGGCGGGACTGCACGTCGCGC 95330 32 100.0 36 ................................ GCCGAGGGGCGGCAGCCGGTGAAGTGGCTGGCTACC 95262 32 81.2 0 .......G...C..A..A.......C..C... | ========== ====== ====== ====== ================================ ===================================== ================== 24 32 98.7 35 GTCGCTCCCCATACGGGGGCGTGGATTGAAAC # Left flank : TGCATGTCGAGCCGGCGCCGGATCCGATCTCCGGCGATCCCGCTGGCTATGTCTCCCTCCTCGCCGTGTCGGAAGCGGCGGAGGGGCGAGGGACGGCCCGCGCCCTGATGGCGGCGGCCGAGGAGGTCGCGGCGGCGTCGGGCTGGCGCTTCCTCAGCCTGGACGTCTTCGCCAACAATGGCCGCGCCCGCGCCTTCTACGAAGGGCAAGGCTTCGAGCCCGAATCGCTCCGCCTCTACCGCCCCGTCGGCGGGTGGCCGGACAGCCCGCCGGACCCGCGCTGACCGCGCATGGCACCGGCCCCGCGCGTCCGCGCCGCGTCCGCGCGAACCCCAAGCGCACACGAAATTCCCGGGAGGTTCGCGCGGGCCGAAAACCCAGGCGCCGCAAGCGCTCCGGCGGTGGGCCGCGCCTGGAGGGGGGCCACGAGCGGCCGATGCTCGAAGGTTCGCGCAAATGGGATGGTTTCATGAACCGCGCCAATGACTTACACTGGGGCC # Right flank : CGGGGCCGGCGAACGTCCCTCCTCGTGGGGCTCCATCATCGCTCCAGCCACGCCAACGCTGCCAGGTGGGCGCGTCGGCGTGCCGGTGGCGGCGGGCCTTGCGGCCGGGGCCGTGCGCCCCGGGCAGATCACCCCGGGCAGATCACTGGGCGGTGCGGCGGGCGGCGCGGGCTTCCACGGGGGATTCCTCGCGGCGGGCGGGGACGTCGCGGTCGAGGCTGGGGCGGGAGGGGGCGCGCAGGACCAGTTCGTTCAGGCGGCAGGCCATGTCCATGGCGACGTCGAAGGCCGGGTAGATGTTTTCCGCATCCAGGTCGTTGCACAGGGCGCGGGCGTTGCCGTAGGCCGATTCGCGGGTGGCGGGGTGCAGCTGGTTTGTCATGGGGAACCTCCTGGTTGCGGTTGTCCGAGCCGCCGGGATGCTGCCGGGTTGCCGTCTCTTGTCTTAAAGATAGCTCGTCTGCATGGTAAGCAAATCAAAATGCACTCGCGCTTCTGAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 256380-253403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQV010000002.1 Azospirillum sp. SYSU D00513 NODE_2_length_299653_cov_29.947260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 256379 31 100.0 36 ............................... TACTTCGCGGACAATGGCGACACTGTATTGCAGCGC 256312 31 100.0 34 ............................... AAGGTGCGCTTTCGCCGTCTCGGTATCGGGGTAA 256247 31 100.0 34 ............................... GCTGACCGAACGCGCCAAGGCGCTGCAAGCACTG 256182 31 100.0 34 ............................... CAGCTTGTCCGCGAGCGCGATCCGCGCTTTCACG 256117 31 100.0 35 ............................... GCCGGCCATGCCGGCCCCAGCCTGGATGCCGAACT 256051 31 100.0 35 ............................... GTGTTCAACATCGGCGCCGACGAGGACGCCGACGA 255985 31 100.0 35 ............................... TCGTCCCAGGAGTCCTCGCGGACGTAATAGCCGAT 255919 31 100.0 34 ............................... ACCACGTCGATGTTGGGGGGGATCGACAAGGCCA 255854 31 100.0 34 ............................... ATGCTGGACTTCCAGGCGGCGTGTTCGGAGATCG 255789 31 100.0 35 ............................... ACCTGGCGCGAAACCATGATGTACCACGCGATCAG 255723 31 100.0 34 ............................... GTGCCGGGCGCGGGGGACACGCCATGATGCCGCA 255658 31 100.0 34 ............................... ATGCCCGAGCCTCGGGTGTGCCCTCGCTATTATG 255593 31 100.0 34 ............................... GGTCATACAGCCTCCCTCGGCGCAGGGCCGGTGC 255528 31 100.0 34 ............................... ACGAGCGGCGGCAGCTGGCTCCTTGGCTCGGCTT 255463 31 100.0 35 ............................... CACCATCGCCAGCCGCTCGATGAACGGGGCATAGA 255397 31 100.0 36 ............................... GGAGGCTCAAGCGCTGCCCGCAAGGTCCTGCTCAAG 255330 31 100.0 34 ............................... AACGGCACCCAGTACCGGCTGAACGGCCATCACC 255265 31 100.0 35 ............................... CTTCCACTCCTCTAGCTCAAGACTGCCGCTCGTGT 255199 31 100.0 34 ............................... GAGCGTCGAGACGACCTTTTCGGCCCTGTCGACC 255134 31 100.0 37 ............................... ATCGTAAGCCTCGTTCTCCCAGGCCAGCGGGCATGTC 255066 31 100.0 35 ............................... CCTTCATCAATCCACACAACCATAGCCTTCTGATG 255000 31 100.0 35 ............................... CCTCGCCTTGCGCGTCGGTGACGATCACCTCGCAG 254934 31 100.0 35 ............................... GTCTGTGCGACCATTTCGACGGTGGGTGTGGCCCT 254868 31 100.0 33 ............................... ACCGCGAGCCGGCAGAACTCGCACCGGTCGGCG 254804 31 100.0 33 ............................... GCGATACCGGCACCGCCCTGAAGAGGGGAAACC 254740 31 96.8 35 .......T....................... GTTCTGGTTGCTACCCAGGCCGCGCAGCCATACGG 254674 31 100.0 34 ............................... CTCGCCTTGGCTTGGCGGCACTCAGGCGAGCAGG 254609 31 100.0 35 ............................... CTTGAGCATCACGCCCCAGCGGGCGCAGACGGGAG 254543 31 100.0 35 ............................... ATCCCGGACCGGCCGGGCACCATCGTGTCCAACGG 254477 31 100.0 34 ............................... GCTTTTCGGGTGGCGTAGGGAGGTTCCTGCCCAC 254412 31 100.0 34 ............................... GTCGCGAATAGCCCAGCGTAATTCAGGTAGACGG 254347 31 100.0 34 ............................... CCCTCGATTGGATGAGGTTTGAAATGCTTTGTGC 254282 31 100.0 34 ............................... AGCTTGGCGAAGCGGTAGCCGTATTCGACCGCCG 254217 31 100.0 35 ............................... CTCGCTGGTTCCGTTGAACACCATCACGAAGTCGG 254151 31 100.0 33 ............................... CCGCAGATGATCGGCGACTCCGACAAGACCAGC 254087 31 100.0 33 ............................... TTCCAGCCGGCCCGGAAATCGTCGGTGCCGAAG 254023 31 100.0 34 ............................... CAGCCCGCCGGTGCCGAGATACGTCTCGGTCAGC 253958 31 100.0 35 ............................... GATTGGGATGAGCTGAAAACGGCCTACAACGGCCG 253892 31 100.0 35 ............................... TCAGCGTGAGTTGGCTGACCGCATCGGTGTTCATT 253826 31 100.0 34 ............................... GACACCGACACCCAGGTCCGCCGCCTGATCCTCA 253761 31 100.0 35 ............................... TGCTCGGCCCAGCGGGCGATCTTGCGTTCGTGGTT 253695 31 100.0 34 ............................... TCCACGAACGGGACGGCAAGATAGGTCCGGTCGC 253630 31 100.0 35 ............................... ATGGCGGCGAAGCGGGTCAGTTCCTCAGCCTCGGT 253564 31 100.0 35 ............................... TTGATCGTGCGGCCGGAAATCGTGACGTCCACCTT 253498 31 100.0 34 ............................... CAGTCGTCGAGCAGCTGGAGGCTGGGCAGGGCTG 253433 31 96.8 0 ...........................G... | ========== ====== ====== ====== =============================== ===================================== ================== 46 31 99.9 34 GTCGCTCCTTCACGGGAGCGTGGATTGAAAC # Left flank : GCTGATGCTCATCACCTACGACGTGCGCACGGAGGACAGGGCCGGCCGCCGCCGCTTGCGCCGCGTGGCGAAGGCATGCCAGGATTTCGGCCAGCGTGTGCAGTTCTCCGTCTTCGAATGCGAAGTGGATCCGGCGCAGTGGGTGGCCCTGCGCGCCCGCCTGATCGGCGAGATCGACCCGGCGACCGACAGCCTGCGCTTCTACCACCTTGGCTCCAACCCCGCCCGCCGCATCGAGCATGTCGGCGCCAAGCCCGCCCAGGATTTCGACGCCCCGCTGATCTTCTGAACCCCCGCCACGGGACAGGACCGGCGAATCCGCGCGAACCCCAAGTGGACACGGAAATGCCGGGAGGTTCGCGCGGGGCGGTTTCCCATGCTTCTTCAACAGGTTGATGGATGGTGGAGGCGAACCACTCGGCCGTCTGGTAGGCTGCGCGCGGCAGGTTCGCGCAACAGCGGGAATTGCTCCTTCTTGGACAAGTGCATAGAAAGAGGCG # Right flank : TGGATCTCCATCCCCTTGCCGTTCCAGGCTGAGGAGTGCTCCTCCCTAGGAACGTGGATGCTCCCTCACCGCCCAAGCCGCAATGGCTCTCCCCCTTCCACACGGGGAAAAGCCACTCCGCCAAAAGCCCCCCGCCCCCTACTCGTCCGCGTCCAGGTCGATGACCACCGGCTTCTGGATCCCGGCCAGGCGCCGGCGGCGGTCCGGGTTGCGCATGCGCTGCTTGCCGTGCTTGTGGTCGGCCAGGGTTTCCACCGGGCCGCCGGCGCGCACCGGACGTTCGGCGAAGCGGCCGAGGCTGATCATGCGGTCGTACATCACCAGGGCGCCGGCGACGCCCACGTTGATGCAGAACTTCATCGGGATCTTCACGACATGGTCGCAGCGCTCCAGCAGGGCGGGCGACAGGCTGCCGCGCTCGGGCCCCAGCACATAGGCGGCGCGCAGGGGGTGGCGGAAGCTCGGCAGTTCCACCGCGTCCTCGGTCAGCTCCACCCCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39684-37325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQV010000035.1 Azospirillum sp. SYSU D00513 NODE_35_length_79476_cov_25.169499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 39683 32 100.0 34 ................................ GCGCGCGTCCCCGCCGAGCACCGCTACCGCGCCG 39617 32 100.0 34 ................................ TGTGGTTGCCGGGCGCCCGGCGCGTGAGGATTAG 39551 32 100.0 34 ................................ ATGTCTCGTGATTGTGGCGGCCGGCAGCGCAGGG 39485 32 100.0 34 ................................ ACGGGCATGTTCCTGTCGAAGACCGACGCGGCGA 39419 32 100.0 35 ................................ CGCAGCATGCCCCCCAGGTCCCGCCGGGTCGCATA 39352 32 100.0 35 ................................ CTGCGGGGCGCTGAAGATCTGATTGCCCGATCCAC 39285 32 100.0 36 ................................ GTGCCGCAGATCGTGGAAGCGTAGCCGGTCATCATC 39217 32 100.0 35 ................................ TCCCGGCGTTGCGCCAGGACCGGCTGGACGCTGAT 39150 32 100.0 36 ................................ CGACGCCATGCGTGATGCCCGCGACCAAGTCGAGGA 39082 32 100.0 35 ................................ GACGTGGACGTGCGCGACCTCATGGCGGGTGCCGG 39015 32 100.0 33 ................................ ATGGAGCAGGTCGTGGGCGCCGCCCCGGAGGTA 38950 32 100.0 36 ................................ ACCGCTTTTGCGCAGGGCTGGCAGGCCGACGTCAAC 38882 32 100.0 36 ................................ CTGTGGCTGGCCTTCGGCTCGCTCGACCATCTGGCC 38814 32 100.0 34 ................................ TGGTGCGTGCCGGCGGTGGCGCACCTGCTGGGCC 38748 32 100.0 33 ................................ CTGCCGAAGTGTGCGATATGCCGAAGCGTGCGG 38683 32 100.0 33 ................................ ACGCCATCCCTCAAGGCGGCGAGGAACCATGTG 38618 32 100.0 33 ................................ CGCTGCTGTCACCGTCAAGGATCCCGTTGTGCC 38553 32 100.0 36 ................................ GGGCGCCGGACCAGCATCAAGCTGACGGCAGCCGGC 38485 32 100.0 37 ................................ CACCGAGCCGCATCACCTGATGCGCGGGGTTGAGCGG 38416 32 100.0 34 ................................ ATCGTGCCCATCGGGATGGCATGCCCATCGCCGG 38350 32 100.0 34 ................................ CGGGCCAAGGGCCTTCGCGTCAGCGACGCGACCG 38284 32 96.9 32 ................C............... AGCTTGGCCATGGTGTGGCTCCCCTGGATCAG 38220 32 100.0 35 ................................ CGCCAGGGTAGTCCGCCACATCAACTCCATCCCAC 38153 32 100.0 33 ................................ ACGGTGTCGCGCGCTGACCGGCTCCAGGTCCTG 38088 32 100.0 37 ................................ AAGTACATGGTCTGGACGCTGGGCGAGAATTTCGCCA 38019 32 100.0 33 ................................ AATGCGCTCATGCGGGCCGGCCAGGCCGCGGAC 37954 32 100.0 35 ................................ GTCTCCTGGGATGACGCAAAGCTGGCCGTGGCTCT 37887 32 100.0 35 ................................ CCGGTGGATACCGACAAACGGGCGAGCGATCCCTT 37820 32 100.0 33 ................................ CTTGCGAATCTCCCCGCCTCCACCATTTGGCCT 37755 32 100.0 35 ................................ GCCCCAGACGGCTGGATGACCAGGAAAAGCCCAGG 37688 32 100.0 35 ................................ TCCAGCATCGCATAGACATGCCGACGCTCGACGGA 37621 32 100.0 36 ................................ TGGTGGGGGATCGGGAACGCGCTGGGCAAGGGGCCG 37553 32 100.0 35 ................................ CAACACCGCTCCGGACATCTGGCCGGACGACGACG 37486 32 96.9 33 ..........................C..... CAGGTGGGCGCGCGCTCGATGAGCCAAGAGCCG 37421 32 100.0 34 ................................ TTTGCGATGATGGCCGAGTACGAGGCCAACCAGC 37355 31 90.6 0 ..........................-..GC. | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 99.6 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : CGGATTTCCTGCAGGCGAAGCTCCAACTCCTCCGCCGGCAGGCCGGCGAGGTCGGCCGCCGCCGGCAAGGCGGGAAGGGCTGGAGGAGGGGGCGCTTCATCTTCTTTGCCACTCGCCACAACCCGATGTCCCGTGCCGTCACGCCGTCATGATCGGACCCATTGATGCAGCCTTGACCGTTTCGAGTCAAATTAACATAGGTTAATGGAGGCCCGGGGTTGGACGCCTGTTTCGAGGAGCGGCAACGCCATGCTGGGCAGTCGTTCCGAGCGGGCGGTGGGCCGTTGCCTGGGGATGCTCCGACAGAATAGGGCGAGGTTGCGCGAACCCCAAGCGGACATGAAAATGCCGGGAGGTTCACGCGGGGCGATTTTGCCCGGATTTCCAATGGGTTAAAGGATTGGGGCAGCGGACGGAGCGCCGGTCTGTTAGGCTGTGCAGGCGGGGTTCGCGCGAAAGCGGGAATTTCTGGTTCTTGGACAAGTGGATAGACAGAGGCT # Right flank : ACCTATTCAACGATCACGCCGGAAGACCGTCGCTCCTTCACCTGCCCGGGCATGAAGAACCCGCCAGCGGGCAGCCGGCGGGGCTTGGGCGAGGTGGGTGTCAGGTGCCGAAGGTCACATGGCCTTGAGGATCGATGGCCCAGAAGGGGTTCCAGGCGATCTCCCATGCGTGTTCGTCCGGATCGCAAACATAGCCGCTGAAACCGCCATGAGGGGGTTCGACGGGGCTTTTCAGCAGATGGCCGCCGAACTGCAGAAGGCGGTTCATCGTGGGCTGCACGTCCTCGCGGGAGGGCGCATTGTGGGCCAGGGAAAAGGCTCCCGGCCGGGAGAGCCGCTCTCGTTCAGTATCGGCCGCCAGAGCCGTTTCCAGCCACGTGCCGAGAACGAAGCCGTTCATTTGATAGAAGATGATTTCCGCGTTCTCGAAAACCGGACGCCAGCCGAAGCCTTCGACGTAAAACCGCCGCGACCGCGCAAGATCGCTGACGCCCAGCGTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 71071-70770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQV010000031.1 Azospirillum sp. SYSU D00513 NODE_31_length_96215_cov_22.488567, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 71070 32 100.0 36 ................................ CTCGAGCGGGTGCATGTCGCTCCGGTTGATGTTCTC 71002 32 100.0 36 ................................ GGAAATCTGTGTCGGGTCGAGCCCCTCGAAAAGCTG 70934 32 100.0 34 ................................ GTGCTTGTTTTCAACGGCACAGCGGAGGAGGTGA 70868 32 96.9 34 ...................G............ CGGTGTCACCTGTGCTAAAGCACATCAAGTGGGC 70802 32 71.9 0 .....G......C.A..A...CA.T.CA.... | G [70800] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 93.8 35 GTCACCCCTCATGCGGGGGTGTGGATTGAAAC # Left flank : CACACACCGCCCATCCGGCGTGGCCCAGCGTTCCCGGCGGAAGCGGATGCGCCGTGCCCGCAGTTCCAGCTCTTGGACGGTGAAGTCCTCATAACCCTTGAAGCGCGACCCTTCCGGCACGGCCGCGGACAGGACGCGATCCTCGCAGGCCACCCTCTTGGACACCTTGCCAGCCCGCCCGCGCCGCCGGCGCGGCCGCCCTTCGGCCGAAGCCCCTGTCGCCGCTTCCATGCCGCTCGGCTTGCCGGCCGGCTTGATCTCCGGCTTGCCCTTCACGCCTTTCAGCTGCGCCACCTCGGCACGCAGCTCTGCCACCATCTGCTTCAGGGCGGCATTCTCCGCCAGCAGACGTTCCAGCAGGGCTTCAAGGTCGCCACGCGACAGGCCGGACAAAGACGGGCGTTCCGCGCTCGGCATGCCAATACACATCGCCCGATCCACGCTGATGGCAACCCCTCAGCCCAGCTCAGTGCCCGGCCTTTTGCCCCTGTTACGAAGCG # Right flank : AACCGGCCACTTCGGGTGAGAGTGGACGGGCGTAACGGCCGGGGAAGCGCCCCGCACCCACATGCCCGTCCCAGAAACACAAGCAATCCCGGAGGCGCCCCGGTGCGGGCGCCGCCGGTGCGGCGTCAGCGCTTGCCGATCAGGTCCAGCAGGTACTTGCCGTAGCCGTTCTTGGCGAGCGGCTTGGCCAGTTCTGCCAGTTCCGCGTCGCCGATGTAGCCCATCTGGTAGGCGACCTCCTCGATGCAGGCGATCTTCAGGCCCTGGCGCTCCTCCACCGTCTTCACGAATTCCGAGGCCTGGAGCAGCGAGGCGTGGGTGCCGGTGTCGAGCCATGCGAAGCCGCGGCCCATCAGCTCCACGCGGAGCGTTCCCTCCTCCAGGTAGCGGAGGTTGACGTCCGTGATCTCCAGCTCGCCGCGTGGCGAGGGCTTGATGGTCTCGGCGATGCGGACGACGCGGTTGTCGTAGAAATAGAGACCGGTCACGGCGTAGTTGGA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCCTCATGCGGGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 81098-81733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQV010000031.1 Azospirillum sp. SYSU D00513 NODE_31_length_96215_cov_22.488567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 81098 32 100.0 34 ................................ GAGCTTGGGGTCGAACACCCGCTCGCAGGAGACG 81164 32 100.0 36 ................................ CCGTTAAGCCTTACAACAGTGGCGGGATGAATTAGC 81232 32 100.0 37 ................................ CCGATGTTCCGGCCAGACCTGCATATTGCGAAGCAGC 81301 32 100.0 35 ................................ CGCGCCGGCGCCACCGCCCAGACCATCTACGACGC 81368 32 100.0 34 ................................ GATGAGTGGGCAGCTGGCGCTCGGGCGATGGAGT 81434 32 100.0 33 ................................ TCCCAGATCAAGGCCGTCCGGTTTCCGACCTTC 81499 32 100.0 37 ................................ CGGACGTAGAGGTCAATCACTGCTTCATCGGTCACCG 81568 32 100.0 35 ................................ GGTGGCGCCCGGGCGGGCGAGCTGGGCGACGGCGT 81635 32 96.9 35 ................A............... GTGGAGAAGGACGAGGCGAAGGCCGTGGCGAAGGT 81702 32 96.9 0 ................A............... | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 99.4 35 GTCACCTCCCGTGCGGGGGTGTGGATTGAAAC # Left flank : TCCTGTGGAAGTGACGCCGTGCTGGTCCTCGTCTGCTACGACGTCTCCACCGAAACCCAGGCCGGACGTCGGCGCCTGCGCCGCGTGGCGAAGGCCTGCCAGGACCATGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCACGGTCGATCCGGCACAATGGACCGCGCTGCGCGCCCAACTCCTCGGTCTGATCGACGACCGTACCGACAGCCTGCGCTTCTACCTGCTGGGCTCCAACGCCCGGCACAAGGTGGAGCATGTCGGCGCCCGCACCCCCACCGACCTGGAAGAGCCGCTGATCCTGTGACGCGCGGCCTCTTGCGCGAACCCCAAGCGCCCATGAATCCCCCGGAGGGTTCGCTCGGGCGGAAAACCCAGCCATCGCAAGGATCCCGGCGCCAGGCCGCACGCAAAGACGTACGCGGCGGAGCCTGCCCGCACCCGGTTCGCGCGAACGAGGCGGTTTTCTCAAGCCGGGCAATGGCTTACAGTGAGGCG # Right flank : CAAGCTATCGCTGGCCGTGCTGCCCGTGCACCTGTGTCCCCCTTCATGCAGGGGTGTATCGAAGCAGCCGCGCGATCATCTCGGGTGCGATCCTTTGCCCTGCGGACAAGCTAGGAGCGGGCCGAACTGCCTCACTGAACGCCATGCCCCGCCAGCCCGCGTCGTGACTTTGGCATTTGCCCGCTGTTGGCCTGGAATGAAAACAAGCAAAGGGAGGGGACCATGTTGAACGGTGGGGGAACACGGTCTGGGGCGCTGCTGCTCGCGGCTGCGGTGGTGGTCGCCATCGCGTTCGGGGGGGCGAACGCGATTTACGGCTGAGTCCGGCGGGTTCCGGGAAGGGATTGCCCGTCGCGCGCGCATGTTCATGCGACGTCGTATGACGGGCCATCCTGCCGGGGAATGACAGGGCGGCATCCGGGGGTTGCCGCACCGTGCATGTCCGCGCCTCGGCGCGGCCCGCTCGCGCCATGCGGCGCCGGGCCAAGGCCGGGCCAAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTCCCGTGCGGGGGTGTGGATTGAAAC # Alternate repeat : GTCACCTCCCGTGCGGAGGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 23091-21603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQV010000066.1 Azospirillum sp. SYSU D00513 NODE_66_length_28000_cov_21.842893, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23090 36 100.0 30 .................................... GTGGGCGAGGCGGTCACCATCACGGTCCCC 23024 36 100.0 30 .................................... CGCCAGAACGTACTCTGTGCCGTCCACATA 22958 36 100.0 30 .................................... CCAGGCCGTGTAGACCCGGCGCTCCTTGAA 22892 36 100.0 30 .................................... GACAGCCGACTTCGGGGCGGAGCGCCTGTG 22826 36 100.0 30 .................................... TGACCGTCTGCGGTCCCTACACCGGAGAGC 22760 36 100.0 30 .................................... CGCACGGTAGAGCGGTCGGAGGATCGGGGC 22694 36 100.0 30 .................................... TGGTTCTTGCCAAGGGTCTTGATTGGGCAA 22628 36 100.0 30 .................................... CGCGACACCATTCTTGAACGTCAGGCTGTA 22562 36 100.0 30 .................................... CACCTGCTCGGCATCCGGACCCGTGCGTTG 22496 36 100.0 30 .................................... GCGTTGTTCCGGCCGGCGATCTCGACGTCG 22430 36 100.0 30 .................................... TGCCCAAGTGGACGGGTCGAAGGCAACGCC 22364 36 100.0 30 .................................... CAGAAGCGCCGCATCAACACGCAGACGCTG 22298 36 100.0 30 .................................... CCGCTGGTCCGCCTGAACCTGGGGCCGGGG 22232 36 100.0 30 .................................... GAGGGCGGGCCGGTGCTGGCCGCCACCTCC 22166 36 100.0 30 .................................... ATTCCACGCTGTGCGTGTAGCGCGGCGGGA 22100 36 100.0 30 .................................... GATGCCTTCGCGGCCGCCAAGAACCGGCCG 22034 36 100.0 30 .................................... GAAGTGGACAAGCTCGGCGCGGCTGTCGGC 21968 36 97.2 30 ............A....................... ACTCGACCACGGCGCGGCCGTCGAACTTGT 21902 36 100.0 30 .................................... TGGTCGACGTGAACCATGCGGCCCGCATCA 21836 36 100.0 30 .................................... CCGCGCGTCGTCTCGGTGACGGCGGTAAGC 21770 36 100.0 30 .................................... AGAGTGGCGTAGGCGGCTATCGCAGCCGCG 21704 36 100.0 30 .................................... GAGCACGGCCGGAACAGCATGGTGATGGCG 21638 36 91.7 0 ...................C..............TG | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.5 30 AGTTTAGCCGATGGGAAACTGCGGTCCAACCGCAAC # Left flank : GTGCTGAGCCTGCCCGGCGACGCGGGGCAGGCCTGGGCGCCGATGCCGCTGGAATGGCCGGTTCCACCGCGGGTTCCAACTCCGGCGTAGGATCAACCGATGCTGAGCGGGTACCGGATCATGTGGATGATGGTTCTGTTCGACCTGCCGGTGCTGACCAAACGCGAGCGCAAGGCCGCCACGACCTTCCGCAAGTTCCTGCTCGACCAAGGCTTCGAGATGTCGCAATTCTCCGTCTACATGCGGCACTGCGTCGGGAAGGAACAGGGGGAGGCGCTGACACGCCGCATCGAAAAGGCGATTCCCGCGACCGGCAAGGTCCACGTCATGTTCTTCACGGACAAACAGTACGAATCCATCCTGTGCTTCGACGGCCGGACCCGCCAGCCGTCCAGGAAGAATCCGGAGCAGTATGTGCTGTTCTGACCCCCGCCGAGCCGAATTTCGCGCGCGGAAAGCGCGGGATAAGCTTGCTTTTTCAGCAGCTTATCCCGCGATCC # Right flank : GGCGCTTCACGCGGCGCGCCGCCTGTTTAGCCGGCCTTGGAAATCATGCTGTACAGGAAGGGAGTTGGTTGGGGGACTAGGATTCGAACCTAGGCTGGCGGAGTCAGAGTCCGCTGTCCTACCGCTAGACGATCCCCCAGACCGTCACCGGAGCGCGCGTGCCGTCGGCCGGCGTCTCCGTGGTGTGGGCGGGCTTATAGCAACGCGGGGCGGGCTTGTGAAGCCTTTTTTTCGTCGCCATATGGGCGGCTTCCGGCGGTTTGCCCCCCCCTTCGGGAAAGGCGGCGCGGGCGGTCCCCGCCCTTGGCCTTCCTCGTAAGGAGGGTTTCGCCGTGCGACGAAAACGGTCTATGATGGTTCTCTTTTAGGGAATGTCTGGAGGGCGGCTTGGACGTGCAGGTGCAGAGCGAACGGCGCAGCGACACCGGAACGGTGCGTTCGTCGGCGCTTGCGCGGCCCGTCTTCGCCGCGCTGGATCTCGGGACCAACAACTGCCGGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCCGATGGGAAACTGCGGTCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //