Array 1 88179-89671 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVM01000012.1 Salmonella enterica isolate STY170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88179 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88240 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88301 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88362 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 88423 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 88484 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88545 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88606 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88667 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88728 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88789 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 88850 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 88911 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 88972 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89033 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89094 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89156 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89217 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89278 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89339 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89400 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89461 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89522 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89583 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89644 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1050-3014 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVM01000004.1 Salmonella enterica isolate STY170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1050 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1111 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1172 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1233 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1294 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1355 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1416 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1478 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1539 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1600 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1661 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1722 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1783 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1844 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1905 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1966 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2027 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2088 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2149 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2210 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2271 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2333 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2436 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2497 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2558 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2619 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2680 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2741 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2802 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2863 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2924 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2985 29 96.6 0 A............................ | A [3011] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //