Array 1 66664-66330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUSN01000050.1 Corynebacterium striatum strain 797_CAUR 481_74985_2264233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66663 29 96.6 32 ............................G TTGTTTGTGTGTGGGGCTTGATTGACCATTCA 66602 29 96.6 32 ............................T TGATGCGGCAGGAGAAGGCGAACTACAGCATC 66541 29 100.0 32 ............................. CGGTTGCGCTCCTTTTTCATCCTTTTTTTGAA 66480 29 100.0 32 ............................. CCCGGCGACCTTCGCAGACATCCGAATCAGAC 66419 29 100.0 32 ............................. CTCGTCACGGGTAACGCCACCAAAGCCGCCCG 66358 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : TTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTTAAAATCGGACCACACGGTCCCTACATCCTCACCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACATTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70961-68248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUSN01000021.1 Corynebacterium striatum strain 797_CAUR 171_71071_2518161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70960 29 100.0 32 ............................. GGGTGAAAAAGCCGGTCACACGCCGCTGTATA 70899 29 96.6 32 ..................A.......... GCGGTACCGGGCTTCACGACCGGATTACGGCC 70838 29 100.0 32 ............................. TGAGAGCGATAGCAGCGATCCTTATACGTGCC 70777 29 100.0 32 ............................. AAAGTAACGCCTGTATTCTCCGGGCCTGCCCA 70716 29 100.0 32 ............................. CGTCGGCGAGCTTAATTGTGCCTGCACCAACG 70655 29 100.0 32 ............................. CACATCCATCCAACGACGCCGGAAGAAGTAAG 70594 29 100.0 32 ............................. TAGTCCCGCTTCCTCCCCATGTGGCTAAGCGC 70533 29 100.0 32 ............................. CCCGTCCAGTAACTGTTACTATCCTTCAGGTA 70472 29 100.0 32 ............................. TGCGGTGGTGTGGGTGATTCCGTTGTTGGCGA 70411 29 100.0 32 ............................. CATGAGATAGTGATCCCGTCGAGAACATCATC 70350 29 100.0 32 ............................. ACACCAACGAGGAAACTGAATACATCGCAACC 70289 29 100.0 32 ............................. CATCCATATTTAGGCCCAGAGCCTCAGCACTA 70228 29 100.0 32 ............................. CTCTTCTAGCCTCCGGCCTTGTAGGGGCAATC 70167 29 100.0 32 ............................. TGGGCGATGTACTCTGCCAGGGCTTCGCGGTC 70106 29 100.0 32 ............................. ACGTTGTAGTGACACTGGAAGCGCGGCTAGGA 70045 29 100.0 32 ............................. CCCGCACCGTAAACATTCAGACCACGAACAAT 69984 29 100.0 32 ............................. TGCGGTGTGTGGCCGTCCCATTCTGCTGCGGT 69923 29 100.0 32 ............................. TACTCATGCCGCGCGCTTAGCTTCTTTGACGA 69862 29 100.0 32 ............................. TTCGTGGTCTGAATGTTTACGGTGCGGGTGTT 69801 29 100.0 32 ............................. TAAGACATGGCGTATGCCGGATGTACTGGAAG 69740 29 100.0 32 ............................. CGCCGGGGCGCAACAAGGATATCGACCGCGTT 69679 29 96.6 32 .............A............... CCATGTTGACGCGAAGCGCGACAGGGATTAAT 69618 29 100.0 32 ............................. TTTTGCGCCCATTCAGGGAGTTGGTCAACGCT 69557 29 100.0 32 ............................. TACCCCTACTAGCCGATAAGCTGCACAAGGAT 69496 29 100.0 32 ............................. ACCCATCCGGCACACCTAAACGGATACCAGTA 69435 29 100.0 32 ............................. CCGCGCTACGCCTCCCGCATCGCAGACGATGT 69374 29 100.0 32 ............................. AAGGTTCGTTACGATACCCAGTAGGCTACGTA 69313 29 100.0 32 ............................. TCGTTGACACCGAAGGAGAAGTACTTGCCCTG 69252 29 100.0 32 ............................. GCTATCAGCGCGGTTAAATCAGCAGCCACCAT 69191 29 100.0 32 ............................. TCGAATAAGTATTTCGAGCCGAACACCGACAA 69130 29 100.0 32 ............................. TTCATGGAGCGATTGCCAGGTTTTGAGTAGGT 69069 29 100.0 32 ............................. CCTTGCCGCCACCTACTACTGGACCGCAGCCC 69008 29 100.0 32 ............................. CCCAAATCTATGAAGCCACCGAGGGCGGAATG 68947 29 100.0 32 ............................. TTAATTTTGTGCCAGACCGTGCGGCGGTCGAT 68886 29 100.0 32 ............................. CAATCCGGTGACGCGCTTCAATCGTGGGAATA 68825 29 96.6 32 A............................ GGGCTTGCTGGCCATTCGGCGCGCCCTGTGTA 68764 29 100.0 32 ............................. GAAGTAAGCGTTTCGCAGTGGGGGAAGGCGTG 68703 29 100.0 32 ............................. TAGACACGCTGGTGTGGGCGGCGCTTACCCTT 68642 29 100.0 32 ............................. GTGTGAGAAAGCCTGTCACACGCCGCTGTATA 68581 29 100.0 32 ............................. GAACTACGCCGGGACGAAACCCCTGACCAGGC 68520 29 96.6 32 C............................ GCCGTGAATTTAGTAAAGTGCTTCACCAAATC 68459 29 100.0 32 ............................. CCGGTATAATCCCTAACCAGCTCCGTGGTCCA 68398 29 100.0 32 ............................. GCTCAATGCTCATGATTTCTCCTTTAGTATTT 68337 29 100.0 32 ............................. CCGCGACCACCCCGGACAAGAAACACGAATCG 68276 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.6 32 GGAAATACCTCCGCGTGCGCGGAGAAGAG # Left flank : TAACCGGAAACAGGCAGTACCACGGAGCCGTAACCGCGGTACCAACTACCCGCGCTCAGCACGCGTGCGCGGAGAAGAGTCGCAGACGAGGGTGACTTTAAAGAAGTATT # Right flank : TCTTCCTGAACAGCAACTTTAGTTTGTCTCGGTGCGGTTTTGCGTATGTTCTCGCGAAAACGTGCACGCAAGTAAAAGGCCGTCCATGTCAATGATTGTACGGCGTCGCGGTCCCATAGTGTTGACTGCAAAGCCCTGTTCGCGGGTCCGGTCCTCGTTGATCATGGTTAGGCTGCCGTCGGCGATGGCATTGGAAAGCCGTCGCCACAGGTTATCGCGGACGCGACGGGAAACGTTTCCTACATAAACACCGGTATCTACTTCCGAAAGGAAACGCGAAAGGTAGCCATGCATGTGGTCTGGGAGGCTGGTGGTTGTGATTACAAGAAACATTCAGCGCCGTCCATATTGTGTGTGTCCGGCGACTTCATCGCCGCGCCCAGAGACGAGTCGATCGTCATCACGTGAAGGTAAGTGGGGCGTGAGTACCTCTGTGAGAACTTCCAGCATGTCGACGAGTAAGTTCTTCCGATGGATCTCCCGGCGTAGTTGCTTCCTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 101-2019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUSN01000040.1 Corynebacterium striatum strain 797_CAUR 402_2129_88985, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101 29 100.0 32 ............................. CGTCGTGCTGCACCGCCATGATGGGGTTGGAA 162 29 100.0 32 ............................. GAGTGAGCCGGGACTTCTTCATCCTGCTTATT 223 29 100.0 32 ............................. ATCGTGAACTTGCACGAGCGCTTAACGGGGGC 284 29 100.0 31 ............................. TCTTGTCCGGCTTGGCGTAGGCGGCGGCGTA 344 29 100.0 32 ............................. CGGAAACCTTATCGATCAGCTCGCCAAACCAG 405 29 96.6 32 T............................ TTGTCCGCATCATTTTTGGCACTGGTGGCACT 466 29 100.0 32 ............................. CCATACATCACACATTCTGAAAGCTCCACCAT 527 29 100.0 32 ............................. CCAGATGTGCTCGTCCACGCCGTGCGCGCCTG 588 29 100.0 32 ............................. GGCGTGCACAAAGCTATGGAAGAGTGGGAGTT 649 29 100.0 32 ............................. TCGAGGCAGCCGTACCGGCCATACCCATCCCT 710 29 100.0 32 ............................. TAGGTGCGGGCGATACCCTCGGCTGCCGTGGT 771 29 100.0 32 ............................. CCACCACCCCAGGGGCGGCAGGGCTGCTTTTA 832 29 96.6 32 .A........................... GCAAACCTCATGAAGAACTAGGAGACATAAAT 893 29 100.0 32 ............................. GCGGTGTTCCCGTCTTCTAACAGAACTAGCCA 954 29 100.0 32 ............................. CAGGCCACGACCTCCCATTGCTGCCAATTCCC 1015 29 100.0 32 ............................. ACTTTTGTGCACCTGTGACATGACGCCGATTT 1076 29 100.0 32 ............................. ATATGGTTCTTGCCCAGGTGTTGGATATGGCT 1137 29 100.0 32 ............................. TGTCCAGCATTCCGGCAAACACGGCGCCGGTG 1198 29 100.0 32 ............................. TACAAGTTGTTTAGCGACGCTGCCGCGAAGAA 1259 29 100.0 32 ............................. AGCTCGCCCCGCGTGCCTCGGTAGGCGTTGAT 1320 29 100.0 32 ............................. GGAGCTGGCGTTACAGAAGAAGCTACGATCCG 1381 29 100.0 32 ............................. CGTCCGTCGACCAGACGATTCGCTACTCGAAT 1442 29 100.0 32 ............................. TTGTCGCGCTTGTCTAAGTCCTACTCAAAGCT 1503 29 100.0 32 ............................. CGGATGAGGCAGGCCCAAGCATCGGCATCAAC 1564 29 100.0 32 ............................. CCGGTATCAGCGCGGAAGATGTCCGAAAAGCG 1625 29 96.6 32 T............................ CGGTGTACATCTTCTCACCATCCATATGGATA 1686 29 100.0 32 ............................. ATGGTATTCGGTCCGGTATTAAACGTAATCTC 1747 29 100.0 32 ............................. AAAGTAGAGGCCTACTTATCTAATCCAGGGTG 1808 29 100.0 32 ............................. GATATTCCTCTGCCCAATCTACCTCTTCATCA 1869 29 96.6 32 ..........................A.. GTGTTTTCGGCCTGTTCCCCTCCCCCCTTCTT 1930 29 96.6 32 A............................ GCGTACCCTTGGACGATTGGGAAGTTCCAGAT 1991 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GGAAATACCTCCGCGTGCGCGGAGAAGAG # Left flank : CTGACATCCGCGAACTCACCGAAAAGCTGCCCCAACCGTCTGACTAAACTGAGCCAAGTCAGGAAGAGCACGCTTCCTGTAACTCCAGCCGTGGCGCTATG # Right flank : TCAGTAAGCCCCCACCATGAGGTCATCGCCGGGGAACTACCTCCGCGTGTGCCGGTTCGTCGTAGTTGGTACCGGTAATCCGCGTAGTTGGTACCGGGTTTCCGGGTAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //