Array 1 29409-28709 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESM01000127.1 Serratia marcescens strain K27 NODE_176_length_102175_cov_16.219368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29408 29 100.0 32 ............................. TTTCGATCACATCGCTGCAGATGCTCTCTCAG 29347 29 100.0 32 ............................. CCCCGCCATCGTAACCCGGAGCGAACCCGAGT 29286 29 100.0 32 ............................. CAGCAGCCAATGATCGACACGTACCAGCAGAA 29225 29 100.0 32 ............................. ATGCTGCGCAATCTGCCCAATTTGCTGCACAT 29164 29 100.0 32 ............................. GTTTTGTGACCGCGTTCGGCAAGAGCCACGGG 29103 29 100.0 32 ............................. AAACACTGGTTACGCCCTGTTTCAGAATTACG 29042 29 100.0 32 ............................. GATATGTGGTCGGTAAAAGTTGGTCAGACTGT 28981 29 100.0 32 ............................. GATGTAAAACGCAGCGTCGAGCACATCGACCA 28920 29 100.0 32 ............................. CAAGAAAACACCCCGGAAAAGTTCTGCGAGAA 28859 29 100.0 32 ............................. ATTAGGCCTGGCGGGTTTGGACGCACTACCCA 28798 29 96.6 32 ...........................A. TTAGGTGAAAAGCTCAAGCAAATAATCTGCCC 28737 29 86.2 0 ...............A........G..TC | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTTGATGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGACTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGAACACGGAAAGCGCATTCCAAGTGTATCCGCTGGCGGAAGACGCTTTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : CAGAGCTTCACTGCCGCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTATCGGTCATCGTACGCCGTTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGCCACAATCCCACCCCCGGCCGCCGGTGCTTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCAAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36490-35117 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESM01000127.1 Serratia marcescens strain K27 NODE_176_length_102175_cov_16.219368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36489 29 100.0 32 ............................. GGCATGCGGGTTTCCACATTTGGGCGGGTTAC 36428 29 100.0 32 ............................. CAGGGTTTTTATTGATGGTTTGGTCAATTATT 36367 29 100.0 32 ............................. GTGACGTTGGTTCGGGCATAGTCACCGTGACC 36306 29 100.0 32 ............................. TATAGTCGCCAAGCCAAAGACGCCGTATTAGG 36245 29 100.0 32 ............................. AGCCGGCAACCCCTCCGCCAGCTTCACAGCAA 36184 29 100.0 32 ............................. CATCCAGACGCTCTGGCGCTGGGCGCGCAACG 36123 29 100.0 33 ............................. CCCCAGCAGTCAGTTTTGCCGAGGATGAACGGC 36061 29 100.0 32 ............................. TCATTATCGAAACTTTGCAGATCGTTGTCGGT 36000 29 100.0 32 ............................. TGAACTGAGTGCTGCCACCGGGGTAAAGATCG 35939 29 100.0 32 ............................. GCATCATGCGCCAGCGTGTAGGTCTGGCTGAC 35878 29 100.0 32 ............................. CGTCCTGTGGGCGCTTCATTAAGACCACTGAG 35817 29 100.0 32 ............................. GTCGCATGCAGAACCAAGGCGTAGCTGCGGCA 35756 29 100.0 32 ............................. ATGTAGCGGTTCAGCTTCTGCTGACTGAGGTC 35695 29 100.0 32 ............................. GATGACCACAGCACCTGTCGTGATGACACAAT 35634 29 100.0 32 ............................. TCAACATCATCGGACGCCTCGGCCAGGATCCC 35573 29 100.0 32 ............................. CGATATGTCCTTCCTGACGCGCATGGCCGAAA 35512 29 100.0 32 ............................. CCATGATAGCGATATTAATTCTTATCGGAGTA 35451 29 96.6 32 ...........................T. GGGCAAAAACATTATGAGCAATATCAGCATTC 35390 29 100.0 32 ............................. ACGGGATCGGTGAAGAAGAGGAAGCGGCGCTG 35329 29 100.0 33 ............................. CTGATGGCGTTCGAGTACGGGCTGTTTATCGCA 35267 29 100.0 32 ............................. ACCGTGCTGTAACCAGGAACGGGCACCGGATC 35206 29 96.6 32 .............T............... AATCCTGCCACGGTCAGCTTGCTTGCCAATGC 35145 29 89.7 0 ............TT............T.. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAAGTATTGGCAGCAGGAGAGATTGCAGTACCACCACCTTTCGAGGATGCGCAGCCGCCGGCGATTCCAGAGCCTGTCGGATTTGGTGATGTTGGTCACAGGAGCCGCAGTTGATGGCGATGCTCGTAGTGATAACGGAACAAGTTCCTCCCAGACTGCGTGGCCGCTTGGCGGTCTGGTTGCTGGAGATCCGTGCGGGGGTTTATGTAGGCGATGCATCGCGCAAAGTCCGCGAGATGATTTGGCAACAAGTTACTGCGTTGGCAGATGAAGGGAATGTTGTTATGGCCTGGGCGACGAATAATGAATCAGGATTTGATTTTCAAACCTGGGGGAAAAACCGGCGTGAGCCGGTGGATCTGGATGGACTGAGGTTAGTCTCTTTCTACCCTATGGAAAATCAATAAGTTACCGATCTTTAAAAACATGGAAAAGTTGGTGGAATTTTAGGTTGGTAAAAAAGTCAATTATTACAATTGGTTATATTTAGA # Right flank : TCTTTTGTTGGCGGGGTACGCGCCATCTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGTTGAATGAGGTGTGGGGCGACGTGGTGATGATGCTGGTGCTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGGCGGGCGTAAACAATGACTCTGCGTTCAGCCTTGCGCGGCGGCGGTAGACATTGCGCCAACCAGAGCGGCGATCTGCGCGATCTCCTGTGGTGATAGCGCATTGTCTCCCAGCCTTCGCAGCAACGCCTCGCGCGCGACGGCAAAGGCCAGCGCTTGGCCGAGAATGGCGTGCGCGCGCAGGATATTCTCCCGCAGTTCCGGTTGGGTGCCGCGGATCGCCGCGACCAGCTCGCTCACGGCCTGATGCAGCGGTAAGAATAAACGGGCATGCAGAGTGTCGAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46574-45383 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESM01000127.1 Serratia marcescens strain K27 NODE_176_length_102175_cov_16.219368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46573 29 100.0 32 ............................. TAGGTTTTTTACCTGATGGATCTGGTTTTGAA 46512 29 100.0 32 ............................. CAGTCGGAAAATCCGGGGCAGTGGTTTAAGCG 46451 29 100.0 32 ............................. GTCTGAGCTGAAATCACCACGCCATGCAGCAA 46390 29 100.0 32 ............................. AGTATTTCGACAGTCTGGCGGAAGGCGAAGAG 46329 29 100.0 32 ............................. CTGGCAGCGGCAATGGGGCTGCTGTTGAGTTG 46268 29 96.6 32 ...................A......... AATTTCCGATGGTTGATAGTCTAGTTCGTGAT 46207 29 100.0 33 ............................. CAGAGTTTATAAAACACGGATGGCCCGTTATTA 46145 29 100.0 33 ............................. GAGACGTTAGAACATGGCACTGCCGAAAAAACT 46083 29 100.0 32 ............................. CGTCACCGGCAGATCACCGCATGCAGCAGCAT 46022 29 100.0 32 ............................. TAGCGCTCGGCTTTGAAATACAGATCTCGTCA 45961 29 100.0 32 ............................. GTTGTCGCGATCGACTTCACCGCTTAATGCCA 45900 29 100.0 32 ............................. AAATAGCGCACTTCACAGTTCACGATATGCGT 45839 29 100.0 32 ............................. CGCCCATGACGTAGGCCGGGCCGGTCGGCAAC 45778 29 100.0 33 ............................. CTGACCATTCCGGCACTTCATTCCCGGCACTGC 45716 29 100.0 32 ............................. TACACGCAGAGCGCAGATGTGATGACAGTTTG 45655 29 96.6 32 ...........A................. CTCTGTATCAGCAACCTCAGGGGCAGCTGTAA 45594 29 96.6 32 ................T............ GCCAAGCTGGAGGTGGGTGATGCCGTTAACTC 45533 29 96.6 32 ............................C CAACTGATGGGTAGTTGGCCGGCCAAGATATG G [45511] 45471 28 72.4 32 A.A......ATAT....A.......-... GTTGCAACAACGAAGCCTACAGCAGCATTAGC 45411 29 69.0 0 A.......TA..TA..T........T.AA | ========== ====== ====== ====== ============================= ================================= ================== 20 29 96.4 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACAGAATGTCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAGGTGTGGGGCGACGTGATGATGATGCTGATACTCGGTGTGGTCTACACCCTGCTGGGCTTTGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGAATGTTCAGGAAACGGCGGGCGTAGGGGATGTATCTTGTTGTTATAGCGTGAAAATTCGGTAATTCTGCTTTATTTCTATAGATGGATTTTTTATTTATTATATTTCAAAGGGTTATGTGGTTTCCCGGATACTTAGATCACGGTGAAATTTCGTAGATGTTGAAAATTCATTTAATTCAACTAGATATATTTAGA # Right flank : ACTAATAAAAAGAGATAATCTCAACCACAAAACAGTACCATGCTAATCATATCAGTTAGTATAAACTTCTTTTGTCTTATTTAAGAGAATATATGAAATTTAAATTAGTCTTTTGGGGCTTTAGCTTTACTGTGTGAGCTTAACTGGTTTTTTGTGTTTCCGAATAATTTATAAGTACCCTTAATCTGATAGAGATGCTAAAAGTATAAAGCGTTATTTATATCTGAACGGGATTTTTTATGGGAAGCGATATCCCTGACTATATGCGCTACTGGGGAAAGGCCAAAAAGGTAGACTTACCAGAGGGGGATGATTACCACCTGCTAGCTTATCACTGTCTGGATGTGGCGGCGTGTGGATATCAAATGGTTATTGATAATCGTTTCCATGCCGCTGACATTTTTGCAGAGATCGGATTTTCTCGAGATGATGGCGCATACTGGTTTGCTTATTTCCTGACGTTACACGATATCGGTAAATTTGCGCGAGGTTTCCAACAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //