Array 1 16082-15078 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUH01000072.1 Salmonella enterica isolate STY142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16081 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16020 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 15959 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 15898 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 15837 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 15776 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15715 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15654 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15593 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15532 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15471 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15410 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15349 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15288 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15227 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15166 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15105 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 135300-133335 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUH01000003.1 Salmonella enterica isolate STY142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 135299 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 135238 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 135177 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 135116 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 135055 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 134994 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 134933 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 134871 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 134810 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 134749 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 134688 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 134627 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 134566 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 134505 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 134444 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 134383 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 134322 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 134261 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 134200 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 134139 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 134078 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 134016 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 133913 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 133852 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 133791 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 133730 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 133669 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 133608 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 133547 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 133486 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 133425 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 133364 29 96.6 0 A............................ | A [133337] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //