Array 1 123338-123637 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJDQ01000001.1 Enterococcus hirae strain F1129E 113 ENT4_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 123338 36 100.0 30 .................................... AAATACATGGAAACAAAAGCGCCAGAATCT 123404 36 100.0 30 .................................... GTAAAAAGTTATGGGATCACTTCCATAAAG 123470 36 100.0 30 .................................... TAAAATCAAAGATTTACTTTTCAAAAGGTA 123536 36 100.0 30 .................................... AGCTGCTCTTGAAGAAGCTGAGTATACACC 123602 36 86.1 0 ..........................T...TG..CT | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : AAGGACGGATTTTTGAAGGTCAAAAAATGGTTGTGATCGAAGACTTGATTTCGACAGGCCAAAGCGTTTTAGAAGCAACGGAAGCAGCCAAAAGAGAAGGCGCTAATGTATTAGGTGTAGCAGCGATCTTTACGTATGAACTACCAGCAGGTGAAGAAAATTTTGCCAAAGCAGAGTTACCACTATTTACTCTCACGAATTATTCTGTCTTGATCGAAACAGCGTTAGCCGAAAAATATATTGATGAAGCGGAATTAGCCTTGTTAAAAGAATGGAAAAAGAATCCAGCGGACTGGTTAAAACAGTAACGAAGAAAACGAAGAAAACGAAGATGGAACAAAAACAAAAGACTCAAAAAAGGGCTTTCGTTGAACAAAATCCATGGTATACTAGGATCAAACAAAACAACTGAATGAAACAAAGGAAGCATCCAAGGCGAAAGTTTTGCTATGGACGAGTAGCGCGATTACGAAATTTCGTAAGAAAAAAATTTCTGCGAG # Right flank : TAATAGTTGCTGTACTTCGCTTGTCGTTTTTAAGGCGAAGAGCTTGCATTGAGCTGGTTTTGAATTTTATGATTATGTTTAATGGAAACTAGAGTTGTTTTTCTGGTTTCTATTTTTTTATAGTAAAATTGCGTGATTCTCAGTAAAAAGATTAATTTTTCGTTGATTTACAAACGGGATGTTTGCGAAAGATAGTTATTTAATGATAAAATCATCGGAAAAGTAAAGGGGAGGCTATTTTATGGGATTGAATGAATTTATTTTAGGTTTGAATAATTTGGAAAAAATTACACGAGCGCCAGGGTTCTTTAAATTTACTGAACATACGGTAGCCGCTCATTCTTATCGAGTGGCTTCGATTGCTCAAGTCTTAGGTGACATTGAAGAGGTTCATGGTCAAGCGATCGATTGGAAATTACTTTATGAAAAAGCGTTAAATCATGATTATACAGAACGTTTTATCGGGGATATCAAAACACCGGTCAAGTATGCAAATAAAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 71242-71594 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJDQ01000008.1 Enterococcus hirae strain F1129E 113 ENT4_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 71242 36 100.0 30 .................................... AACCGCATTACCTTCAGAAGAATTTGCATT 71308 36 100.0 30 .................................... TAAGGGTTCAACGCAGTACACATTGAGTTT 71374 36 100.0 30 .................................... ATCTAAGCGGTAAGTGCTTAGTAGCTTCAA 71440 36 94.4 29 ..........................T........T GTAGAAGCGTTGTGCTTTACTCGATCGCT 71505 36 77.8 17 .........T.G....A......G....A..TC.T. AACTATGATAAGAGGTA G [71533] Deletion [71558] 71559 36 75.0 0 .C.......T................AA.GA.G.TG | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 91.2 27 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : TAAAATCAAGGATTGATCAATTAACCACCAGGGTTCAGGAATGGATTAGTGAGGAACTCTTAGAACATGAATTAGATTTAGTCTGTGAAGAAATGAGTATGGTTGAGCTATTCAAAGCATTAAAAATAAGAATTACGACGCAACCAGAATCAATCTTTCAAAAAATAATGGAGATTTTACAGATTTATAAGTATCTAGTGAAAAAGAAATGCTTGGTTTTTATCAATGTTGGAGCGTACTTAACAGCCACAGAAATGGCTGAACTACAGGAATATATTTCTTTGTGTCATATGCCTGTCCTTTTTATCGAACCACGAAAAATAAAAGGATTGAAGCAAACTGTTTTAGATCAAGACTATTTTTTGTGTGAAGAAATGTGGTAAAATAAGAACAATCAAAATAACAAAAAAACAGCATGAATGAAGCATTCAAGACGAAAGTTTTGCTATGGACGAGTAGCGCGATTACGAGATTTCGTGAGAAAAAAATTTTTCTGCGAG # Right flank : GCCTACTTTATCATGAAAAGTAGGCTCTTTTTTTACTTATATATAGGAAAGTGTCTTCGGTTGTTGAATCTGCTAAGTTTTGATCATTGAAAGGGGGAATCGTGCCTTTTAAAAATGAATGGGTATGTTTACGGAACAGGACACAATTGTTCAGTCTTTTCAACATTGAAACGAATTCATTTTCTCAAAGAAAAGATGAGTTGCTAATTTCGTGCTTTTTCTCTATCATCAAACAGTAGGCATTTGTTCGTGAACTAAAATGAATGTGAGAGGGGACAGTGAGATGTTTGATACAAATTTGATAACTTATTTGGACTGGTTGATCGCAATTTTAAATATTGCTTCAATCATTATTTTGCTGGTAGGGATTTTTTTAGTCTTAAAAAATCTTTTTGACTGGCACCCACTGAAAAAAGACTACGAACAGCGTAATTTCCGAAATGCGGAAGTACGTAAATTATTGGCTAGTTATATTTTGCTGAGTCTAGAGGTGCTAGTGG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //