Array 1 19390-20557 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVCV02000044.1 Pseudomonas aeruginosa strain PABL047 NODE_44_length_50942_cov_50.433, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19390 28 100.0 32 ............................ TGGACAAGCTCGCGCAGCAGTACGATCTGCGG 19450 28 100.0 32 ............................ TGTGGCTACAGGCAAGCCCTGATCACCCGCAC 19510 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 19570 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 19630 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 19690 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 19750 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 19810 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 19870 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 19930 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 19990 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 20050 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 20110 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 20170 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 20230 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 20290 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 20350 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 20410 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 20470 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 20530 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31631-29082 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVCV02000044.1 Pseudomonas aeruginosa strain PABL047 NODE_44_length_50942_cov_50.433, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31630 28 100.0 32 ............................ TTCTCGCCCAGGTGGTCGGCGATGTCGCAGAC 31570 28 100.0 33 ............................ CTTCAGGATCAACTGAACTAACCGGGCTTCCAG 31509 28 100.0 32 ............................ TGCTGCATCGGCAGCTTGAGCGCCAGGCGCGG 31449 28 100.0 32 ............................ GAGGTGCTGCGGACCCTGCCGTTGTCGATGAA 31389 28 100.0 32 ............................ TTTCGGACGGTCCGCCTAGCTGATCAGCAGGC 31329 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 31269 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 31209 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 31149 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 31089 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 31029 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 30969 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 30909 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 30849 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 30789 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 30729 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 30669 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 30609 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 30549 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 30489 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 30429 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 30369 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 30309 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 30249 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 30189 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 30129 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 30069 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 30009 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 29949 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 29889 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 29829 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 29769 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 29709 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 29649 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 29589 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 29529 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 29469 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 29409 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 29349 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 29289 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 29229 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 29169 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 29109 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 43 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //