Array 1 970007-971428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071001.1 Limosilactobacillus fermentum strain GR1007 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 970007 36 100.0 30 .................................... AGATAATTATGGGTTATAAAGCAACTCCTC 970073 36 100.0 30 .................................... ATCTTTACGGTTTCAGCATCACCATCTTCT 970139 36 100.0 30 .................................... AACGGACTGATGCAATGTTAGACGCCCTTT 970205 36 100.0 30 .................................... AAAATATACTCAATTTGATACCCAGGGTGT 970271 36 100.0 30 .................................... TTAATGATGCGCTGAAAGGCATTGCCAGTC 970337 36 100.0 30 .................................... ACAACTATTTCAATCTATCGAAATTATTAC 970403 36 100.0 30 .................................... GAGTAACAGTGGCTTTACGCGTGAGAGTAC 970469 36 100.0 30 .................................... ACCAGGTTTTGCGTAACTTGATTGACGCCA 970535 36 100.0 30 .................................... AAGTGGACGGTCAGCTCTACACCATCAGAG 970601 36 100.0 30 .................................... ATCGACAACGTGATTGGGGACCCAATTGTC 970667 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 970733 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 970799 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 970865 36 100.0 30 .................................... AACTGGACGAGTGCGGATTTTTTTGTTGCA 970931 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 970997 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 971063 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 971129 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 971195 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 971261 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 971327 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 971393 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.1 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1475773-1474463 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071001.1 Limosilactobacillus fermentum strain GR1007 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1475772 29 96.6 32 ............................C TAAATGGCCGTATCTGTCGATACCAATTCTGA 1475711 29 96.6 32 ............................C CCAAAGGTAATGGTTGAATTGTTGCCTACCTG 1475650 29 96.6 32 ............................C TTTAACTACGATTTTGCAAAAGAAAAAGCCCT 1475589 29 100.0 32 ............................. TTGGTTATCATCGATTGCCACTCCAGAAGTTG 1475528 29 100.0 32 ............................. AGATGCCCGGTGACACTATTAACCGTTAGAGT 1475467 29 96.6 33 ............................C CTCGTCATTGCCGAAGGTCGTACCTGGCTTGAG 1475405 29 96.6 32 ............................C AGCACTCGTCAACTCACAAGATCAGACGATTG 1475344 29 100.0 32 ............................. ATACTCAAACTTCTTCGTTCCGCCGAAATACG 1475283 29 100.0 32 ............................. TAGACAGACGGTTTTATCCGTTAAGTCAGTTT 1475222 29 100.0 32 ............................. TCCGATCATCGGAGCTTGGCTTTCAAAACAAC 1475161 29 96.6 32 ............................C GACTTTACCGTCGATGGAGCAGGCGGTTTTAA 1475100 29 100.0 32 ............................. GAGCGAGTAATTTTAAGAGCTTTCGCAACATC 1475039 29 100.0 32 ............................. GAAGAAGTCAACACAGATTATCGACTTGTCAA 1474978 29 100.0 32 ............................. AGCCAGATAGACAATCCGGCCAGCGTCACCCT 1474917 29 100.0 32 ............................. AGTAAGAGCATGTATCCAGTTGCCTTCCAGAT 1474856 29 96.6 32 ............................C AAGTGCCATAATCGCCGTTTTACCAATCTTTT 1474795 29 100.0 32 ............................. TACACGAATCAAGGTAAGAATGCACCACAAGG 1474734 29 100.0 32 ............................. TAGGGATGCGTACATTGGCCAGCTTTGGAAAA 1474673 29 100.0 32 ............................. ACATACCCAGTTTATCCAGTTGGCCGGTTTCC 1474612 29 89.7 31 .............G.......A......C GACATGTGGAAGAGGCTGATCGCCATCCCCG 1474552 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1474492 29 79.3 0 ...T.......TC.A........A....C | T [1474487] ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.7 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAATGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //