Array 1 54-2322 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAIF01000058.1 Methanosphaera sp. A6 contig_168, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 54 29 100.0 36 ............................. GATTTTTTTTATAGAATTGTTGCAGTAGAGGAAGTA 119 29 100.0 37 ............................. TATGTAGTCAAAAGCTTCTGATTCAGTAATATAATCA 185 29 100.0 37 ............................. GTTCTTAATTACTTCTTTTATTTGTCTTGCAACATTA 251 29 100.0 36 ............................. CCATGTATCACTTGGAATTGTTTTATCCTCGTCTAG 316 29 100.0 37 ............................. TAATTTAATATTCTTTACATATAAACGTCCACTATTA 382 29 100.0 36 ............................. CTATAAATTCTTCAATTTCACTGTAGAAATCATTAC 447 29 100.0 36 ............................. GGAGTTGTATTAGGTATATCACTTTCATTTAAATAA 512 29 100.0 38 ............................. AATACAATGTATACACAAGTAATTCCACCTCAAACAAA 579 29 100.0 38 ............................. ATTTTCTGTTAAAAGTATTATGTAATCTATAGTATTTG 646 29 100.0 38 ............................. CCAAGTATTACTCCTGATAATGATGCTCAAAATCCATT 713 29 100.0 36 ............................. TACACTACAACAACAAAGAACAACAAAATAATGAAA 778 29 100.0 38 ............................. TGTAATTGTAATTGTATCTTTTGTTGTAGCAATAATTT 845 29 100.0 39 ............................. TCCAGCTTAAAAGTACAAATCAAGACTATTTTATTGGTA 913 29 100.0 37 ............................. GATTACATGAAACATATTGAAGATGAATTAATAAACC 979 29 100.0 36 ............................. TTATTTGAAAATAGGAATAAATAGTGAAAAAGAGTT 1044 29 100.0 36 ............................. GTGAAAAATATATTACTCCACCAAATACAGAAGATG 1109 29 100.0 36 ............................. TTAGTATAACAGATTTTCATTTCTACTGCATCTAAG 1174 29 100.0 38 ............................. TATAAGTTCCATTTTATAATCTGTTTTATCTCAATTTT 1241 29 100.0 37 ............................. TCTGTTTCTGTTATTTTTGTTTTGAGTAGTTTTGTTA 1307 29 100.0 36 ............................. TGATAACCCAACGTTGCTCTTTTACGTGATTCCATA 1372 29 100.0 38 ............................. TTCAAATACATCTCCTACTTTTTTATAATCAATTTTCA 1439 29 100.0 38 ............................. TATTGTTGGCTTTTTAAGGGGGTCTGTATATTCACTAT 1506 29 100.0 36 ............................. TGAATTAATATTAAAATATATTAATTTAAAAGCATC 1571 29 100.0 37 ............................. ATTATTGTTTTATTTGTTCCATCACTTGTTTTCATTA 1637 29 100.0 37 ............................. GAAATACACTTGTAAAAGAATATGATATTGATGACCT 1703 29 100.0 36 ............................. ACAGTTGAAATTGTACTATGTGTTTTATTTCAAGTG 1768 29 100.0 37 ............................. ATTGATTGTTTTCCACATATCTTTTTGAATGTTATCA 1834 29 100.0 37 ............................. AATGGAGAATTTAAACAAGACTATGAATGGGAAGATG 1900 29 100.0 37 ............................. GAAAAAATAAAATTGTTGGACTCACCACCTCTACGAA 1966 29 100.0 36 ............................. TTAGTCCGGCTAGTTTTAAAGGGATTGATTATCCAG 2031 29 100.0 37 ............................. GTAAAATCTATAAGTATAATGACACATATTATTTGTT 2097 29 100.0 37 ............................. TTATTTTAAACACTGTTTCAATATTATTCCATATATA 2163 29 100.0 36 ............................. GTTCATTAATGAACTCATTATCAATTTCTACCTCAA 2228 29 100.0 37 ............................. TTTTATTATACTTGACATTGTTTTTATTCCTCTATTG 2294 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 35 29 100.0 37 GTTTTCATACTATTAAGTCTATTTTAAAC # Left flank : TTAAGTCTATTTTAAACCTTTTTGTATGATTATTTATGTTTTAGAAGATTAAAG # Right flank : TTAATATCATACTGGTGAGTATAATTATAATTTCATTGTTTTCATACTATTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATACTATTAAGTCTATTTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 643-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAIF01000085.1 Methanosphaera sp. A6 contig_214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 642 30 100.0 37 .............................. ACGACACAAATGAATACAGATGCAACTCAAATTACAA 575 30 100.0 36 .............................. GGAAGAGACCATAAAAATGTATTTACGGAATATATT 509 30 100.0 36 .............................. TTTAAGTAACTCATCTGATAATTCAGTTAATGTTAC 443 30 100.0 37 .............................. ACTAATATCAACAAACGGAATTTCAGCACTATTTGGG 376 30 100.0 36 .............................. TAAGCATTACCATTAACAAATTTACAGTTTTCTACA 310 30 100.0 37 .............................. AAAGAACGTTTAATGATTAATTCATCTTCAGAGTCAA 243 30 100.0 36 .............................. TGATTTAGAAACATATCAATATCCATTCGAAATAGA 177 30 100.0 37 .............................. TATTTTCTAATAAATAGAGTAATGCTTCATCATTATC 110 30 100.0 36 .............................. TCAGCATCATTTACACTAGCAACAAGGGTAGGAGTT 44 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 37 AATAGAATAAGATCATAATGAAATTGAAAT # Left flank : CAATTGAATAGAAATGTGTCATATAAACACTTAATACGTTTAGAAGCATATAAATTAGAAAAACATATTTTAGATATTAAAGAGTACACACCCTATAAAATAAGGTGGTAATAATGTATATAATTATAGTATATGATATTAACACAAAAAGAGTAAATAAAGTAAAAAGTTTACTACGAATGTATTTAAATTGGATACAAAACTCTGTATTTGAAGGAGAAATAAAACCAACACAATTTAAAGAATTAAAAATAAAAATAACTGAAATAATAAATAAAGATGAAGACTCAGTAATAATTTATAAAATGCCACCCACATATAAACCAGAAAAGACAATAATTGGAATTGAAAAATCACCAATAAAAAATATACTATAATTTTCTAACAAAAATTGTCGTCTAACCCTCACCTCATTTTCCAAATGAGACATCAACAAAAAACTTAATAAAAAAGAAGAATAAACAAGTAATTATAAGGAAAATAAAGAAAAAAAGTTTCCT # Right flank : TAAGTAAAAAAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAATAAGATCATAATGAAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 2035-2460 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAIF01000089.1 Methanosphaera sp. A6 contig_221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2035 29 100.0 38 ............................. CGGATTTGATTAAAACGTATTACCCAATCATATATTTC 2102 29 100.0 37 ............................. TAGATATTTCAAATTTACAATTACCATTTAAAAAAAC 2168 29 100.0 38 ............................. AAGAACGTTTTGCTTCTAATTCAGAGTATAATACTTTT 2235 29 100.0 36 ............................. CCAATGAGGAAGAATATCTCGGTCTAGAAAAAGGAG 2300 29 100.0 37 ............................. AAGGAAATTATAATTATACTCACCAGTATGATATTAA 2366 29 100.0 37 ............................. CAATAGAGGAATAAAAACAATGTCAAGTATAATAAAA 2432 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 100.0 37 GTTTAAAATAGACTTAATAGTATGAAAAC # Left flank : AAAACAACAATAAAACATCCACAAATTAAGAAAAAAGTCTCATATAGATACTTAATAAGATTAGAAGGATATAAATTAATCAAACATATACTTGAAGATAAAACATACGAAAGCTTCAAGACGTGGTGGTAGGAATATACATATTAGTAATATATGATATTAAAATAGAACGAATAAATAAAGTATACAAATTTCTTAAAACATATTTAATATGGATTCAAAATTCAGTATTTGAAGGAGAAATAACAAAAGCACAATATAAAACAATGATTATAAAACTAAAAGAATTAACAGACGAAGATGAAGATTCAATAATTATATATAAGATACCTAAGAAATATTTAAATAAGGAAGTACTTGGAATAGAAAAAAATCCAATAGAATTTATACTCTAGGTCCACTCCCCTATAATTTTTACAACATTAGGGGTGGACTATAAACAACTACTTTTTTAAACAATCACAACAGTTTAAAGAGTAAAATACGAAAAATTTTTTGGC # Right flank : TTGAGGTAGAAATAGATAATGAGTTAATTAATGAAAGTTTTAAATAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAATAGACTTAATAGTATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 46-740 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAIF01000020.1 Methanosphaera sp. A6 contig_118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 46 30 100.0 36 .............................. GAAGCAAACCATGAAAAACCAACTGAAAGATGTAAA 112 30 100.0 37 .............................. GGTGTTAGTACAGGTATGGACGGATTACTCCATGAAA 179 30 100.0 36 .............................. ATAAAAATAACAAATGGAACAACAACAAAAACAGTA 245 30 100.0 35 .............................. GTCGTTGAACAAGAAATAAGAATTATAGAAAATAA 311 30 100.0 37 .............................. TTAACATCTACAAGGTCATGAAGAAGTTTTGTTTCAT 378 30 100.0 36 .............................. CGATACATTTTTAAATTACTTGTATCAGTAGTAATA 444 30 100.0 37 .............................. ACTCTTACCCGATTTAATTATGAATATCTTCAAGCAT 511 30 100.0 36 .............................. GATGTAGAAGATGAAGTTGATGAATTTCTTGAAGAG 577 30 100.0 37 .............................. GATATCTTTCATATATTATCATTTTTATCATATTTTT 644 30 100.0 37 .............................. TTGGTAAAAGAAATAGCGGAAGACAATGAATACTCTG 711 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 36 AATAGAATAAGATCATAATGAAATTGAAAT # Left flank : AATTGAAATCGTATAAGTTATTGTACATTTAAAACAATGGCTGAAA # Right flank : TGTATATTCTACTGTTTCTACTATTTCTACTGAGTAGAAACTATTATATTTACCAAAGTAATATATTACAATAAGGAGGTTTTAACTATGGTTTTAATTAAATCAATAAAAGTAAGTGAAAAAACACATAAATTATTAACTAAAATTTGTCCTAAAAATAAATCATACAATGACATAATATATAATGCATTAATTCAACAATACACAGAAAAAGAATACCTAACTGACGAAGAAGCTGAATATTGCAATAAAATGATAGACCAATTCGAAAAAGGAGATAATACTGATACATACACAATAGATACTGATAATTTAGATAAAGAATTAGATGAATTGGAAAAACAAGGTGTACTATGAATTACATACTACAATACACTAAACACGCCTTAAAAGACTTGAAAAAAACAAAAAAGAAAAACTTACACGATTACAATAAATTAAAAGAAGATTTAGAAAAACTAAGACAAAATCCCTACACCTCAGCAAATATTAATATAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAATAAGATCATAATGAAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 1586-1879 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAIF01000020.1 Methanosphaera sp. A6 contig_118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1586 30 100.0 37 .............................. GTAGGGTTATAACATTTCTTTTTAGTTATTTATTACA 1653 30 96.7 36 ......................T....... TTAAATACTACTACCTACAGAAATAATATTAAGAAA 1719 30 100.0 36 .............................. TGTTGTCTTATTGCAGTTAATACACTTTGAATTAAA 1785 29 93.3 35 ................-G............ AGTATTTAATATAAATAATAACTATTTGTTAATAA 1849 30 76.7 0 ................CT......AATTT. | A [1852] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 93.3 36 AATAGAATAAGATCATAATGAAATTGAAAT # Left flank : GTGTACTATGAATTACATACTACAATACACTAAACACGCCTTAAAAGACTTGAAAAAAACAAAAAAGAAAAACTTACACGATTACAATAAATTAAAAGAAGATTTAGAAAAACTAAGACAAAATCCCTACACCTCAGCAAATATTAATATAAAAAGTTCTAAATGTCCCAGATGTAAACGTATGAAATCAGGAACGCACAGGATAATATATTATATTCATACTACTAAACCAATAATAGAAATAGTAATGATAATTGAACGAAAAAAGAACTACAGAGATTTTTAAAAAAAATATTTTATGATCTTCAAAAAAATAATTATTTTCATTCAAAAAAATAAGTTAGTGCTGAAGTAATTAAATTATTGAAAAATAGGAGTGGTGGTTATATCGTGTTAGTTAATTGAAATGTGTTTTTAATTCTTTTAAAATATGCTGTAAAATATAATCCTGTTGTTTAACATCATTACTTAAACCATATTCTTTAATAATATCTTCTTTC # Right flank : TTAATAGAAAAAGTGTGTTTCATGGGAAAAAGATATTTTCTCCCATTACTATTTTTTTTAAATTCCTTAGTCATTGAATTTTCCTAGGAATTCTTTTATTCTTGGATTGTTTGATTGGAATACTTCTTCTGGTGTTCCTTGTTCTTCTATGTATCCATTTTCCATGAATATTATGTTGTCTGCTACTTTTTTTGCAAAGTTCATTTCATGTGTTACTATTACCATTGTCATTTTTTCACTTGCAAGATCTTTTATTACTTTTAGTATTTCTCCTGTAAGTTCTGGGTCCAGTGCAGATGTTGGTTCATCAAAGAAGAGTATGTCTGGATTCATTGCTAGTGCTCGAGCTATTGATACTCTTTGTTGTTGTCCTCCTGATAATTCACATGGATATGCATCTTTTTTATCAGGTAGGTCCATTTTTTCAAGTAGTGCTTCTGCTTCTTTGTATACTTCTTCTGGGTTTCTTTTTTGTACTTTTATTGGTGCATTTGTTATGT # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAATAAGATCATAATGAAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //