Array 1 43238-43449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRY010000002.1 Bifidobacterium choladohabitans strain W8106 NODE_2_length_775797_cov_340.293770, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43238 29 96.6 32 ............................T CCCTGTCGAAGGTCTCGGGGCCGTCCCAGGTA 43299 29 100.0 32 ............................. TCATCGCCTGGCTCCAAAAAACCATGGTCGTG 43360 29 100.0 32 ............................. ACGCATAAGCCATCACAGGTCGCAAAGCTAAC 43421 29 93.1 0 .....A......................G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCATCCGCGGGGATGATCCC # Left flank : CTGGTGAGATGGGTGGCCATCAGATGGGAGGTTCCGACACTGCCACGCAAATCTCACAGTGGGTGGCCAAGCACTATACCGCAACCACGGTTGACGGCGTCACTGTGTATGATCTGAGCCAGCAGCAGGCCAGCTGAGCGCAAAGAGGGCCGAACTATCCAAAAGCTACTCCCTCCGTTTGCGGTTACAGGATAAAGACGAGACGAGCTACTGACTTCTAATTTGTCGGTTGCGAGTAGTTTCCTCGTTTGCGCGTTGAAAAAGTGCAAAGCAGCTAAGAGCTAAGCAGTGAGTGGATTGGAACTATCCCAGCCCGCTCATTTCTTATTGATCAATACAGGATGGTATTTGTGTCCGATTAGAGCAAGACTAGTTATTGCAGACCAAGGCACTTCAGGTCAAACTCAATAGCGTTATTGATTTCATTACGCTGGTCTGCGTTGCATTGGTTTGCATTGCACGGTAGTAGATAATCCTTACAAATGGAAGGATTTCTAAGT # Right flank : GCCTTCTGGAATGATCGTCTTCCGAAGGTGTAGTACATATCCAATATATGGACAGATATTGCCAAAGTGACAATTCTCTAGCATAATTCTCTTATGCATAAATCGTGCATTTTGTTGCGACGGCAAAGGAACCGCCATGACACATATATCTTTGAAACAAAAGCTATTTTCTGACGCGAATGGCTGGGTTCGTGTTGGCGATGCAGTTGCTGGATGCCTTTTCTGATGTCCAATAAACCAATAGATATTGCTGTCAGCTTTTTCGGACTAGCGTTAGTCCTTGCCCATATTATATCGTTTGTTACTGATTCACAGTTCTGGGCTTTATGCACTTATCCAGTGGCTTGGGTGGCGATGATTATCTTTATGGCAATAGAACGCCGAGGGAAACACGATAAAGACTAGCGTCATTTGAAGATGCTGAAATGTGTGAGTTGGGCGAACTGCCACATGTTTTATAGTTCGCCCTGTTCGCTTTTCCTTATGTGCTCTAATTCGTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 775656-772047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRY010000002.1 Bifidobacterium choladohabitans strain W8106 NODE_2_length_775797_cov_340.293770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 775655 32 100.0 35 ................................ GAAGCAAGCCTTAACAAGGCGGTAGAAGCCCAGAG 775588 32 100.0 34 ................................ GTGGTCGCTACTTGTATGCCATGGGGGCGTAACA 775522 32 100.0 34 ................................ TGTACGGTTGCTACTTCATCACTCATTTTTACCA 775456 32 100.0 35 ................................ ACCGTCGCAAAGTCCGCCTACTCGAAACCTCCGCC 775389 32 100.0 33 ................................ CCGTGCGGGCCGCAATTTTTATGAAATTGATCC 775324 32 100.0 34 ................................ CTCAATCTCACGCAATGTGGTGAGCGTGTCGCGA 775258 32 100.0 34 ................................ AAAATCTCTTGACAATCCTTGCGCTACGTTGCGT 775192 32 100.0 34 ................................ ATCAAGCCCGACACGCAAAATCCCCTCATTGCTG 775126 32 100.0 34 ................................ GGTGATGACCAAGGACGGCAAGACCATCCCGCCC 775060 32 100.0 34 ................................ GCGAGTCAAGTTACTTTGATGATCGAATATTGGA 774994 32 96.9 34 .............T.................. TCGCTGATGGTGGTCGTGTTGTAGGAGGTCTCCT 774928 32 100.0 34 ................................ GTGCCGGCGCTGCTGCGCGTCCAGGCCCTCCATG 774862 32 100.0 34 ................................ TGCATACCCGGAAGGAGGTGAGCCATGAGAGGAA 774796 32 100.0 36 ................................ GGTGACGATTATGGTCATCATATGAATCTTGTATAT 774728 32 100.0 35 ................................ GACCTGGCCATGGGGGACCGGGTCATCAAGATCAA 774661 32 100.0 33 ................................ ACCCGCCCAATCACGCTCAGCCGGTGCTCAGGC 774596 32 100.0 35 ................................ TTTCTGGTACGCTAGCGACTCTTTGTAGGCGTGGA 774529 32 100.0 35 ................................ ATTGATGGACCACTCACGGGTTGTGAGTTCCATAA 774462 32 100.0 35 ................................ CTCGACTGGGAGCCGCCAGCAAGCCATAGGGGCGA 774395 32 100.0 35 ................................ CGCGCCCAGCTACGCAGACTCAAAGCCCAGCACGC 774328 32 100.0 34 ................................ CACCAGCACGCCATGGGTGGGCCAGTCCACAAGC 774262 32 96.9 35 ....G........................... CTTGGACTCTGCCGCCTTAGCGTCAGCCTGTGCCT 774195 32 100.0 35 ................................ CTATAACATACATGGCATACAGACTCGCGTTGCTC 774128 32 100.0 35 ................................ AATGGTGGCTCTCAGCTCATCATCGGTATCATCAC 774061 32 100.0 35 ................................ GCGTCATGACTTTTGAGAACCTGATCCCTACAGCG 773994 32 100.0 33 ................................ AACCAGACCCTGAACACTGCCCGCATCACCCTC 773929 32 100.0 34 ................................ TCTTGGTATTCAGCCTTTGCACGTTCTAGCCAAT 773863 32 90.6 32 .....C.....C.........C.......... ATAAGCCGGCACGGAAGGCGCGCCGTCTTGCC 773799 32 96.9 36 ...........C.................... TGTGGCCGGAGCCGACTACGGGCTCTGGGTCGCCGG 773731 32 96.9 35 ...........C.................... CGGTCCGTCACCACGACCACGCCCTTACCTGCCAG 773664 32 96.9 33 ...........C.................... TCGCCTTGGTAGGGCCAGTCGATGGGCAGGGTC 773599 32 93.8 33 .......T...C.................... TGCCCCATGGCGCTGAATCGCTCGCCTTTGCTC 773534 32 96.9 33 ...........C.................... CTCGTGCCCTGATACTCCTCCAGCGTGGCCACG 773469 32 96.9 34 ...........C.................... TCCGTGGAAAGCTGCATGTAGATCATGGGCTTGG 773403 32 96.9 35 ...........C.................... AAACAGCGCATGCAAAGTCCTGCGGACGGTCGGAT 773336 32 96.9 35 ...........C.................... ACGACGACCGCATATACAACCGCCAGGCTCAGCAT 773269 32 96.9 34 ...........C.................... GAGGACGCGGAAGTGCTGGGGGCCTATCTCGGCT 773203 32 96.9 33 ...........C.................... AGGAGGATCGTCATGGATACTCGTCTCACTCAC 773138 32 96.9 34 ...........C.................... AAAGCGACCTTTGCCCTTGACGATCAGCTTTTGA 773072 32 96.9 33 ...........C.................... CAATGCCGCTTCCCTCTCATTGCCCATCGTCTT 773007 32 96.9 33 ...........C.................... GGGATGTGCCTCACCAACCAAGACCTGCACAGG 772942 32 96.9 34 ...........C.................... GCGGGCCTCCTGTCGACGGGGACGACCGAGGCGG 772876 32 96.9 34 ...........C.................... GAGCGATATGCCGGTAACGCTGCCCAATACTACC 772810 32 96.9 34 ...........C.................... AAATGCCCGGTTTCAGCACCGTCAGCCAAGGAAA 772744 32 96.9 34 ...........C.................... CGAACAGGACCGCCAAGGAAGTCATGTGCAACCA 772678 32 96.9 36 ...........C.................... CGAAACCGCCCGTCGGCTCTTCGCCACGCACAACGT 772610 32 96.9 35 ...........C.................... ACCTTCGCAACATAGGAGACGGTGCCGGGTACAAC 772543 32 100.0 33 ................................ AGGGGTGATCGGCAACAATATGAGCGGTGAACG 772478 32 100.0 34 ................................ GCCGAGGTGGGCGGCGCTGAAGCGACCCTGACAT 772412 32 100.0 34 ................................ CGTGTCCTGAAGTGCTCTGGTACAGCGAGGCTGA 772346 32 100.0 35 ................................ TTTGTTGTGGCATGGTGCGTTTGTTTGATTGTTTT 772279 32 100.0 35 ................................ AGGCTCAGCTTCCGCTCGGCCTCCCTCTTCGCCTC 772212 32 96.9 35 ...........C.................... GACGGGGACTTCGACGGCGACACCCTCGCCGTGGT 772145 32 90.6 34 ...........C.........A........G. ATCAGGTCGGTCAAAACCTCGCCCTGTTTAAGAG 772079 32 78.1 0 ......T.T..CT...........G.C.G... | G [772050] ========== ====== ====== ====== ================================ ==================================== ================== 55 32 98.0 34 GTCGCTCCCTTTACGGGAGCGTGGATTGAAAT # Left flank : CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAGTCGCCAGCCATTAAAGGCCAATCATATATTGGTCATTGGATGTATCATTGTGC # Right flank : ACCACTACGATGGTTCTCTACCTGCGGTAAATGCGTAGCCCCTTTCATGGAAGCCTAAATTGGAAAACTGATTGCGTTACTTTGAATTATCCAGACAGCACTGTTTTCTATCGGTAACACGTATCAAATCAGTTCTTTCACCAGAACTCCGTCATAAATTGTACTCCTACTAAGCAGGATTACGAGTTGTTGCTTCGGTATTGTGTCAGTCGTTTTTATGCCATTTGCTTGTTACTAGCCCCCGAAAGTGCCGTGCTCCCCTGCATCTGCAGGAATGGTTCTACGGGCCATCGGATGATGCCCTTCAGGAACACAAATATGAGAGGAGATGAATGGTTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTCATGACCATATTCCTGATGACCGGATCTATAGTTACGCGTCATGGTATCCCATCACTGATGATATGGATGAAACCGAACGCCGTGTCTGGGATTCGCTGGATGATGAG # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTTACGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //