Array 1 3735-3942 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDBI01000088.1 Aeromonas popoffii strain CIP 105493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3735 28 100.0 32 ............................ GCATAAGAAAGCTGGGGTGGAACTGCGTTACC 3795 28 100.0 32 ............................ TGAGCACCGCCTTTGAATCGGCGGGTTCTGCC 3855 28 100.0 32 ............................ CAGGAGTGGAACGCATGAGCGCCCCCCAGACC 3915 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 CCTCGCTGCCGCACAGGCAGCTCAGAAG # Left flank : TGGCCGACTTGCTTAACCTCACTGAGGTGAATTGGTTGCAAGGGATGCGTGATTATATCCATATCGGTGAGCCTGCCCCGGTGCCTCAGGGGACCAGTTTTCGGGTTGTCAGGAGGGTGCAGGCCAAGAGTGCTCGCAACAAGCGCCTCCGTTCTGTGGCAAAAGGTTGGTTGACCGAAGAGGAGGCGCTAGTGCGTATCCCTGATACTCAGCAGAAAGTGATGGCACTCCCTTATGCCGAGATGCACAGTCTCTCCACTGGTAGCAGGATGCGCCTCTATATCGAGCACGGCCCCTTGCTCGATAAGCCGGTGGCGGGTGGGTTTAACGCATATGGGTTAAGTGCTATGGCCACAATCCCCTGGTTCTGACCCTTTTTTTGAGGGTGTAGCTAACTCATTGATCTTTCGATGTGTTCTACGCCCTTATTGCAACAGGGTCTGATAGCCATTCCCAGACAAGCTCTTTAACAATCAGTAAGATAGCTTTAGATTACAACA # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCGCTGCCGCACAGGCAGCTCAGAAGTCCGCCACAATCTCGTCGTGTACGTGCATCACCCTCGCTGCCGCACAGGCAGCTCAGAAGAATGCCGCAATCATGCAATGCGCGAATCATGACCTCGCTGCCGCACAGGCAGCTCAGAAGTGTTTGCGGGTCTACCATCAGGCTGATGTCGTCCTCGCTGCCGCACAGGCAGCTCAGAAGCAGGCCCATCGACAACACTAATGCGATGATAGCCTCGCTGCCGCACAGGCAGCTCAGAAGAGATGCACGATTACCAGGTGGAGGGGGCCGACCCTCGCTGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4132-8482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDBI01000088.1 Aeromonas popoffii strain CIP 105493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4132 28 100.0 32 ............................ TCCGCCACAATCTCGTCGTGTACGTGCATCAC 4192 28 100.0 32 ............................ AATGCCGCAATCATGCAATGCGCGAATCATGA 4252 28 100.0 32 ............................ TGTTTGCGGGTCTACCATCAGGCTGATGTCGT 4312 28 100.0 32 ............................ CAGGCCCATCGACAACACTAATGCGATGATAG 4372 28 100.0 32 ............................ AGATGCACGATTACCAGGTGGAGGGGGCCGAC 4432 28 100.0 32 ............................ AGGGGCCGCCGATGCGGACGACATCATCGGGA 4492 28 100.0 32 ............................ TGGCCCGGGAGCACCATTGTCTCTACAAAGTC 4552 28 100.0 32 ............................ AGGAGCGTGAGTTGGTTGCCACCTGTACTGAC 4612 28 100.0 32 ............................ AAGCACGGCCCTGACGTTCTTGGGCTTCCTGG 4672 28 100.0 33 ............................ CTTGAGAGAATGCGGAGTTCCGCATCTAATAAC 4733 28 100.0 32 ............................ TTCGGGGCTGGGCATTGAGCATCACCAGAGCC 4793 28 100.0 32 ............................ GAGAACGCAGGTCAGCGAGCACCGTGGCCGTC 4853 28 100.0 32 ............................ GCGTGGCAGCTCGACTATCTCGTCCCCTGACA 4913 28 100.0 32 ............................ AGAGGCGGTACAAGCGGCGGAGCAGCTGCTCG 4973 28 100.0 32 ............................ AAGGGCGAAACGGTAGCAGGCCACACCTTCGC 5033 28 100.0 32 ............................ TTGCCGGTGCCTGATGTGTGGGCTCCATTGTC 5093 28 100.0 32 ............................ ATCTTCCCGCCGTGGGATGTGACCTCTACCCA 5153 28 100.0 32 ............................ GTCATGCCAATGGTTCCCGAACCGGTCAGGGT 5213 28 100.0 32 ............................ TGGTTGAGCTGCTGCCGGTGCCTGGTACGTTG 5273 28 100.0 32 ............................ GTACCGGATCGACATCACCCGCACCTCGACCA 5333 28 100.0 33 ............................ ACCAAACAGTTTTCAACCAACCAAAGGAAATCC 5394 28 100.0 32 ............................ AACTGAACATGGCCCGGGCGCGCGCTACTGGC 5454 28 100.0 32 ............................ CGCAGCGTTTGTCTGTAACACCGAGTCGAGTT 5514 28 100.0 32 ............................ TCGGAAGCCAAGCCGATTGCCTTCTGCTCGAT 5574 28 100.0 32 ............................ TCTGGTCACAGAAGGGAACCGGTGGAGCCACA 5634 28 100.0 32 ............................ AGCTCCATGACCTCACCGCTCTCACCTTCTGT 5694 28 100.0 32 ............................ TGGCCCGGGAGCACCATTCGCTGTTTGCGGTC 5754 28 100.0 32 ............................ GTAACCTGGACGATGAGCCGGCCCCGGAAAGC 5814 28 100.0 32 ............................ AGGATGATGGAGATCCCCCAGCGCGAATATCT 5874 28 100.0 32 ............................ AACTGAACACAGCCCGAGTGCGCGCCGCTGGC 5934 28 100.0 32 ............................ TGGACTGGTTGGGTCACCCACTGACCGGCTAT 5994 28 100.0 32 ............................ AAGGTTCGCTGGCCTCACCCCAAGCGCACTTT 6054 28 100.0 32 ............................ TCGGTCAGCTTGGTGGTAACGGCGGCATCAAC 6114 28 100.0 32 ............................ TGGCTGAAGAGACACATCACAGACCTGAAGAA 6174 28 100.0 32 ............................ ATCGAACAACTGGCCGCAGACTACCACAACGC 6234 28 100.0 32 ............................ GCTGATCTGGGCCTTGGTGTACCAGCCTGCCT 6294 28 100.0 32 ............................ ATGGGTGCCAGCTGGTTTGTGCAAACCTCCTA 6354 28 100.0 32 ............................ ACCGACACACCTGGGTGCTGGCCAGCAACCCA 6414 28 100.0 32 ............................ TTTACCCAGCGCCGGATGCTGATGGGTGGATT 6474 28 100.0 32 ............................ TGGCCAGCCTGTGCCGCCTTGGTCGTCACTGT 6534 28 100.0 32 ............................ TGCTGGGGGCTCTGGTAACCAGGCGGAGCAAT 6594 28 100.0 32 ............................ GACAGCAGGCCATTGAAGATGGCCAAGCGAAG 6654 28 100.0 32 ............................ AACGGTATCGAACTGCTCGGCAGTCACGTTGA 6714 28 100.0 32 ............................ AGGCCGAACACGGCGCGGCCCAGCGGCCCCAT 6774 28 100.0 32 ............................ TCGCCAGTGGCCAGTACCAGCAATACTTTAAG 6834 28 100.0 33 ............................ TGTGAGACCGATGAGGAGTTCGATTACCTTGTA 6895 28 100.0 32 ............................ CCGGAGCCGTCCGCGTTCTGTAGCAGATACTC 6955 28 100.0 32 ............................ CGGCCCCGCTGCACGTAGACCGTGCTAGCCAT 7015 28 100.0 32 ............................ AAAACGGTAAGCCAAAGAAATGATGGGGATGA 7075 28 100.0 32 ............................ GTTCGATGAGCGAGATACTCCCACGGCTTATC 7135 28 100.0 32 ............................ CGGTCAACCCAGAGGTCCCGACATGAGCATCT 7195 28 100.0 32 ............................ TGGTTAAGGTGGAAGATTAAGCGGGTAGTGAT 7255 28 100.0 32 ............................ TTGGCGAGGAGTGGCAACCAGAGCCTATCAAT 7315 28 100.0 32 ............................ GATTACGGCGGCATCAGTGCCAGCCTCGGTCA 7375 28 100.0 32 ............................ TCACCGGTAAATGACCCTTCTGAGGTATAGAG 7435 28 96.4 32 .........T.................. CGCGACACCCCCAGCCGGCGGGCAACTTCGGT 7495 28 100.0 32 ............................ GCTGAGCAGATAGCCGCGTTCAACGCAGCCAG 7555 28 100.0 32 ............................ AACGAGTTCAACGTCAACGTTGCCGACCTGTT 7615 28 100.0 32 ............................ TGGTGCCTCAAGCCCAGCAGCGGCATTAAGCC 7675 28 100.0 32 ............................ TGAACACCAGCGATGAACGTGGCTCTGTTAGT 7735 28 100.0 32 ............................ AGCTCGCCCGGCGCCGTATCGAAACCCCAGAC 7795 28 100.0 32 ............................ TGTTTCAGCAGTACATCGGAAGGCCGGCAGAA 7855 28 100.0 32 ............................ AGAAACAGAGGCGTTCATGGATGAAATGACCA 7915 28 100.0 32 ............................ CCGTTCATCTTCACCTGCGAGCCGGAGTAGTA 7975 28 100.0 32 ............................ AGACACCGGGATGATTGCTATACCGTCTCGCA 8035 28 100.0 32 ............................ AGGACTCGCTGGCTCAGATTGCGGCGGAGACC 8095 28 100.0 32 ............................ ATCCCGAGCCAGCTTATCAAAGCGCAGGTGCT 8155 28 100.0 32 ............................ TGGAAACATCCAACGGCAAGACCCGTATCGAA 8215 28 100.0 32 ............................ AAGGCCCAGCTTCAGAACCTGCGCAACAAGAA 8275 28 100.0 32 ............................ TTGCCCCAAGTGCCAGCCGTCACGCCGCTGTT 8335 28 100.0 32 ............................ AGTGAAATCACCATCGAGATCAGCAATACCCA 8395 28 100.0 32 ............................ AAGGCTGACGTAGCCCTTGGCAGTGTCAATAA 8455 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 73 28 100.0 32 CCTCGCTGCCGCACAGGCAGCTCAGAAG # Left flank : CATTGATCTTTCGATGTGTTCTACGCCCTTATTGCAACAGGGTCTGATAGCCATTCCCAGACAAGCTCTTTAACAATCAGTAAGATAGCTTTAGATTACAACACCTCGCTGCCGCACAGGCAGCTCAGAAGGCATAAGAAAGCTGGGGTGGAACTGCGTTACCCCTCGCTGCCGCACAGGCAGCTCAGAAGTGAGCACCGCCTTTGAATCGGCGGGTTCTGCCCCTCGCTGCCGCACAGGCAGCTCAGAAGCAGGAGTGGAACGCATGAGCGCCCCCCAGACCCCTCGCTGCCGCACAGGCAGCTCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTGACGACGACTGGGGGGAGTGTTCACCTCGGGAATATCTGCTCAGTCGGGTATCACAACCCTAAGCGGGAAAAAGTGTCTGGATCTATGTGGCCAAATCCAAAAGCATAGTGACAATTTCGAATCAGACCGATGTCAAGGGTTTACAACTAGTTAGTTTGCCAGCGAAGGTAAGGGGGCATCCGAGTGGATGATATGTCATTAGCATCAACTCTCGGCCACATACTAGGGGGAGCAGTCGATGGTGAAATGAATTGATATCGTGGAATACCTACTAGTTGCTAAATGTGGTACCCCACGTGGTACCCCAATCCAAAAAGCACAAAGGGCTAGCTTCACTGTTAAGCTAACACTTTGTTTTATATGGTGCCGATAAGGGGGATCGAACTCCTGACCTTCGCATTACGAATGCGCTGCTCTACCAGCTGAGCTATATCGGCGTGGCACTAGATTCCCGAAAACAGTGGGTCAAGTCAATGAGTCCCTCTTCTTTTTATGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //