Array 1 43209-44335 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMP01000191.1 Escherichia coli strain JML018 sequence191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43209 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 43270 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 43331 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 43392 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 43453 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 43514 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 43575 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43636 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 43697 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 43758 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 43819 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 43880 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 43941 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 44002 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 44063 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 44124 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 44185 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 44246 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44307 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94093-92600 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMP01000170.1 Escherichia coli strain JML018 sequence170, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94092 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 94031 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 93970 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 93909 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 93848 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 93787 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 93726 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 93665 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 93604 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 93543 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 93482 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 93421 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 93360 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 93299 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 93238 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 93177 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93116 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93055 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 92994 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 92933 29 96.6 32 ............G................ AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 92872 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 92811 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 92750 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 92689 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 92628 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //