Array 1 1248-180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRK01000028.1 Leptospira santarosai strain 56215 Contig028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1247 29 96.6 32 ............C................ AATGAAAAGCGGTTCGAGTTTTCCGCCTTCGT 1186 29 96.6 32 ............C................ GTTGAAATAAGAAATCGGGAAGTTATTTTTTA 1125 29 96.6 32 ............C................ TAATTGGATCCTCTTCCCTCTCCCTCAGGAGC 1064 29 96.6 32 ............C................ GAAGAGCTTGGGCTGTCAATCCATTCGAAACA 1003 29 96.6 31 ............C................ GTCCAATGCCTAAATCAATATGAGCAGCATG 943 29 96.6 32 ............C................ GCGGAGACGGATGCAATGGCGGCGGTTATCAA 882 29 96.6 32 ............C................ AAAGATCATGATTGAAGATTGGATGTTTACAA 821 29 96.6 33 ............C................ GCGGATCAGAACCAGAAACATTATTAAACGCCA 759 29 100.0 33 ............................. GGTAGGCTCTAATTTAGAATTACAAGGAAATTT 697 29 100.0 32 ............................. AAAGATTTCTCTTTATATTTCAAGGGGATTTG 636 29 100.0 32 ............................. CCCGTTCTCTCAGGATCTCTCCAAGCGCCTCC 575 29 100.0 32 ............................. CTAAAGGGTTTTCTTTGTCTGAAATGACATGT 514 29 100.0 32 ............................. GTAAGTTTTTCCAGAACGGGATCCGCCCCAGA 453 29 100.0 32 ............................. CGTAAGATAGTGATCGGAGAGAATGTAACGTT 392 29 100.0 32 ............................. TCTGAATCCTCAGTTCCAGGGGTAGCAAATGC 331 29 100.0 32 ............................. AAACAAAAGAACTTTTGGACAAAGGTGTTTCC 270 29 100.0 33 ............................. CTTCCCATTTTTTGACAATTGCGGGAATGGTTT 208 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAACAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAGCCCGATTCTAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAGATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : GGCTGCGCACATCCGAATGAACCGCTTCCCACCATACGTAGTCGCCCTAAAAAAAGGTATAAAATGAAGAACGTGAGCTCGGCGTAAGAAAATCACAGTTTCCCGAATGTCGGAACTCCCACAGAATCAGAGTTGCCGCCTTTATACACAAACTTCATTGTAAAAAATTCTTTCAAACCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : CTTTTCCCCACACGCGTGGGGTTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32245-31414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRK01000071.1 Leptospira santarosai strain 56215 Contig071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 32244 29 100.0 35 ............................. AAGAGCAGTTAGACGAAACACAGAACGAAGATCCA 32180 29 100.0 32 ............................. TTCCACGGGTGGAGTTATTAACCTGACGTCAT 32119 29 100.0 33 ............................. TTTGGGACGAAAATCCCAAACTTTTTGAATGTC 32057 29 100.0 32 ............................. AAAGAAATAATGGCCGTTAGTTCCTCACTCGA 31996 29 96.6 32 ............................T TCAATCCTCGATTTTCTACTTCCGTAGTAATC 31935 29 100.0 32 ............................. ATTGTGCACCGTGGGTGCGGAGAGTGAAATGT 31874 29 100.0 32 ............................. CGTCAATCGTGTCACCCGCACCGGGTGTTGTA 31813 29 100.0 32 ............................. GAAATTCGCTGTGCCATTCTTCCACAGTTTTA 31752 29 100.0 32 ............................. ATGGATGAGATCAGAGAGATCAAGGAAACGAT 31691 29 100.0 32 ............................. AGGAAATTAGACGAAATTTGCATGTCGTGTAT 31630 29 100.0 32 ............................. AATGTTTTAGGTTAATCTCTCTTTGGCACGGT 31569 29 100.0 32 ............................. CCATTAGATTGTCCAACGAGGCTCTTGCCCGT 31508 29 100.0 32 ............................. ATCAAAACCGCGACCCAGGCCAAGCGGGGCGG 31447 29 93.1 0 .......................C....A | TT,TAC [31417,31423] ========== ====== ====== ====== ============================= =================================== ================== 14 29 99.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GAATTTTTTACAATGAAGTTTGTGTATGGAGGCGGCAGCTCTGATTCTGTGGGAGTTACGACATTCGGGAAACTGTGATTTTCTTACGCCGAACTCACGTTAAATACAATGTCTTTTGAATACGAAGTTTAAATTCAACTAACACGAGTCCGGCGTTTTCTCATGCGTTTTTTTTCCATAAAACAAAATGTGGGAACTCCCACAAGAATTGAAAAGTCCGCTCGAATACTCTCGTCTAGATTCGGCACATAGGCAAACGTTGTAGACCGGGAATATGATATCACTGTAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCTGACTCGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCGCATTTGTCCTATACAAGTTTTTAG # Right flank : AGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAATACGACGGTATAAAGAAAACGAGATATCCAAATCCTACTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATCTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCGGCGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGAGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGGAACCCGAGATCACATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACACATATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //