Array 1 3093-3706 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUET01000115.1 Salinivibrio sp. IB282 scaffold115.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 3093 38 100.0 34 ...................................... TTTACGTTTCCTTTCTTTCTCCGCTGCCTTTTCC 3165 38 100.0 33 ...................................... TGTAATATCTTTAATAATATTAGCTGTGATTTG 3236 38 100.0 34 ...................................... TGATGGGTGAGGCAATGAACATCGTCCCAACTGA 3308 38 100.0 34 ...................................... AATTGCTTTGAATACAGGCGACTGGCCATGTAAT 3380 38 100.0 35 ...................................... CTAATGTTACTATCACAGCAATAAACCATTGATAA 3453 38 100.0 34 ...................................... CATACGTCGGCGCTTCAAAAATTATTTTCACTTG 3525 38 100.0 36 ...................................... CTAAACGTGGTGGTGAGATAACACGTGTGATATGGG 3599 38 92.1 26 .................................G..GT GAAGGGCCTAGGTCCTAGAATCCTAG Deletion [3663] 3663 38 84.2 0 .....G..TT.......................G.T.G | AG,T,T,TT [3668,3672,3674,3678] ========== ====== ====== ====== ====================================== ==================================== ================== 9 38 97.4 33 GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Left flank : GAGGTGCACGATTTTTATGTGGCTAATGGCTTTCAGCTTGTCGAGTCACATGCCTCTTGGCTACGCATCCATGAACATACAAATTATGGCGTTGCGGTTGAGTATGTTGATGAATTGTACGTTAAACCGATGAAAGATAAATCATGGCCTGCAGGGCATATGGATTGGCTGGGGTATATGTATTAATGCCTTCGGTAGACGTCGTTTATGGCGTGTAAGAGGGGTGAGTCGCCTTTGGCTGGGCGCCTGCAGCTATCTGCAGGCGCGTGATGATATCGGCAACTAAACGCCCTTGCTACTGCATTACCGCAAACGACTCGTAAGGGGCCAGTTTGTAGGGAGGGAGAATTAAAATAAGATAATAAGTAATTCATGTGCTTACGGAGGATAGATGAAAAAGGGCATACAGATTGCATAATTTTCTAAAATTAAAGGTGTTTAAAACGCCTGTTTATTTTGCAACTTGCAAAATTAAAAACAATCAGTTATAAATTGAAATA # Right flank : CTAGGTCCTCGCCTCCTAGGCCCTTGATTTCACCCTCTGACAAAAGCATCCCGCTTCATCATCACGTCCCCCCGCTTCATCGCTTCCCATACGCAACACATGTTCACCAATTGGTCATCCCGCCTATTTTGCATCGCACTGTGTAACCTAAGCATGGTTTTACAGCACAGGGGCGAGCCATGCAGACACAAACCATCACCGTCACCACCGCCAGCCAAATGCGTGAAAGGGGGTCTGCATTACACCAATAAGCCGCACATGCTGGCACAAACCCAGCGCTGGCAATTGGTTGTGCGTGGCAAGCGGGTGATCGCCGCGATTTTATTTAAAGCCAAACGTGGCTGGAAATTAGTGGCAATGGCCGCGTGATTTTATTTAAAGCCAAACGTGGCTGGAAATTAGTGGCAATGGCCGCGTGTCGTCGTGCTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 546-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUET01000117.1 Salinivibrio sp. IB282 scaffold117.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 545 34 100.0 38 .................................. ACAACGTCAGATGTATTTACAACGCCGTATTTCTGTCG 473 34 100.0 38 .................................. GCAACAAGCCGCTCAAGAGGAAGAGCAAGCACTCGTCG 401 34 100.0 38 .................................. CTTTCGAAAAAATCAGAAGTAGCTGTCGGTAAATGTCG 329 34 100.0 39 .................................. AAAACGTACTGCTTGATTATACGGTTGCGGCTTTTGTCG 256 34 100.0 38 .................................. TGATTATCATGCAGTGATGCTTCGGTAGCCAATAGTCG 184 34 100.0 39 .................................. TTTAACCTCAGTCCCCAGCAACTCAGCGATTTCTTGTCC 111 34 100.0 39 .................................. CATGACGGCGTCCACACGATACCGTATTCCAGCGCGTCC 38 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ======================================= ================== 8 34 100.0 39 TCACGGACCATGCCCTGACTAAAGGGATTAAGAC # Left flank : TATGTGGGGAATGACCAGATTGTCCATTTAAATGGCGACGGTCGGGTCGAAGCCGTGTCGCCGGCGCGTTTTCTACAACGCCTGGGTGGCTTTAACCCAGCGATCAGTATTTATGTTTCATGCCGCGATAAGCAAGCCGTCGGCTCACCGGCGGCCGCCGCACGGGCGATGCAGGAGATAGGCAAGCGTCAAGACTACAATGTGCTGTTTGACAACTGTCATCAATTTTCGTCATGGTGTTTGTCTGATAACCGTGCAAACAGTGACAGTTTTACCTGGATGCTAAAAGACACCGCCAAGGCGCATTTGCACGCCAATACCTGGCGCGTGTGGGATTGGGAAGATTAAAATAAAATCATAAGCCGCTCAGTCGCTTACGCGCGGGAATAATTAAATGGCACGTCATTTGCTTATTTTTATAAAATTTAGTGTGTTTAAAACGCCTGTTTATTTTGCAACTTGCAAAATTAAAAACAATCAGTTATAACTTGAAATGGTCG # Right flank : CTTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACGGACCATGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1955-1625 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUET01000141.1 Salinivibrio sp. IB282 scaffold141.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 1954 38 100.0 35 ...................................... CATGACGGCGTCCACACGATACCGTATTCCAGCGC 1881 38 100.0 35 ...................................... TTTAGTTGGTTAACAAGTGGATATTGGTTTTCAAT 1808 38 100.0 35 ...................................... GATATGGGATTGTTGCGGTGCTCTTTTGAGTTGAG 1735 38 100.0 35 ...................................... TAGTCTTTCCACGCCTGCTCTGTGTGTGACGCTCG 1662 38 86.8 0 ..T.........T....................G.T.G | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 97.4 35 GTCCTCACGGACCATGCCCTGACTAAAGGGATTAAGAC # Left flank : GATTTCT # Right flank : GCAGTGCCTAGGTCCTAGAATCCTAGGTCCTAGGATCTTGATTCCATGCCCTGACGAAAGGGCACCTCCTTGTGCTTGATTTTTCTGCCATCACCAATTGGTGATCCGTGCGCTGGCGTCGAATAATCGATAAGATTATCCTCATCAGTTGCCCGCGATACTGGGCAGCGTTTAGCGACCCATTACCCCAGCCCCATAAGGAGATGCCATGCAACACGTCCATATCAATCTGGTCTCGAACCAACTGCTCCCGAATCTTATTCCCGCACTGGGCGACAACGCCTGCACGCATGTGATCCTGGTGCTTGGCGATCACACGCTCAAAGCGCGCGCCGAGGCGTTAGCCGATATGTATCGTGATCGCGATATTGAAGTGACACTCTTTGAAGGCCGTAGTAGTCATGATGTGGCGGCGCTGAAACAACAAGCGCGCGAGGTGATCGATCGTCTCAGCACCGAGTTTGCGGATATGCGCTGGATATTGAATGCCACCGGCGGCA # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCATGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 1360-2288 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUET01000131.1 Salinivibrio sp. IB282 scaffold131.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1360 28 100.0 32 ............................ CAAAACCGTTCGCCCATGTCTAAAACCATTCC 1420 28 100.0 32 ............................ TTTAGTCCCTTTCCTCAACTTCGGGTCATCAA 1480 28 100.0 32 ............................ AGCACGCAGAGCGCACGCTTCCACCCAAGGAC 1540 28 100.0 32 ............................ AAAAAACGATGTAACCACGGCAGATACAAGCA 1600 28 100.0 32 ............................ TTGGTGGTTTAATCCGTGGCGGCATCGGCATG 1660 28 100.0 32 ............................ GTTCTGAGGCTTAGCCGCAACAACTTCGACCT 1720 28 100.0 32 ............................ CACCGACAACGAATCCTGATGAGTTCCATGTC 1780 28 100.0 32 ............................ TGGGTAGATAGTGATTGATTCAGTGTCGACCG 1840 28 100.0 32 ............................ GTGACCGGCACGCTGAACTATGCAGAGCACAA 1900 28 100.0 32 ............................ AAAGCGAGTACGCCGGCCAGCCCCTCCATTGT 1960 28 100.0 32 ............................ TCGATACAATCTTTTTGATGCCCTAGTTCTGC 2020 28 100.0 32 ............................ GACCACGTAGCTAGCCGTGGCGGTGATGTGCT 2080 28 100.0 32 ............................ GCCCGTGAAATGGGCAAATCCCCAGTAACACT 2140 28 96.4 32 .............C.............. AGCAAGCTGTCGGGCGGTGGGCAACTCCGCAT 2200 28 96.4 33 .............C.............. TCAGGTAGTGCGGCTGGTAGCTCTTTTTCGTTC 2261 28 82.1 0 .............C.......G.C..TG | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTGTCGTGGGGTCCGTCGCTCATAACGTTTTACCTTACCAAGTTTGACTTCTTCAGATGCAATCAGGGCTTCTTGCACAAAGCTATAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCGATTTTTGCCCAGTATTCAATTTGCTTGGGCACAGAGCGCATTTCAGCTTCTGCATGCACTTTTACATCTGACACAAACTCATCATCTAACCGTACACTGGTTGGCATGATTCATTACCTCGTCTATAAATCTTCACTGGTTAATATGCGACAAAATGTCGCGCCTTGCAATATATTTAGAACTGGCACATCTGGCGTGACTTAAGACGGCTCTGCTTCAACATATGTGATAAGTTGATACCCTTGCGACCCTTCTTTTTTGGCTGTTCAAAAATAAACAATAAATACAAAGCGTTACGGAAAGCGATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAGGTTATTCTAT # Right flank : ACACAAGCCCCGGCAAGGTGTTGAATAGGTGCACATTGCCAACGGGGGCCTGTCACGATCGAGGTTAATCGTTGGCCTCGATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCCGGCACGGTGTTGGATAGGTGCAAATTRCCAACGGGCGCCTGTCACGATCAGTGCCAATTTTAACGACGATGTCGGATGGCGCGCGGTGAAAATCACACCAAGTTTGTACGATCGAGTTAGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96948-97575 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUET01000004.1 Salinivibrio sp. IB282 scaffold4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96948 28 100.0 32 ............................ AGATAAAAAGAGCAGATTAATAGTCTCCCTAT 97008 28 100.0 32 ............................ TGTCTCGGGGCTTCTGTGCGTGTGGCTTGCGC 97068 28 100.0 32 ............................ ATATGTTGGTGCCGCTACTCGGTGAAAGCTTT 97128 28 96.4 32 ..............R............. CATACATCGCATCGATATCCCGCTGACGTTCT 97188 28 100.0 32 ............................ GATCAAAGAGATGATGCAGTGCCCGGAAGTGA 97248 28 96.4 32 ....G....................... ACGCCGCAGCAGGTTGAGTCGCTGGCCAACCT 97308 28 100.0 32 ............................ TCCAAGCCGCCGCCGATGACGTAGAGACGGCC 97368 28 100.0 32 ............................ GCCAATGAGCTGCTCGCATGCTATGGCAAGCG 97428 28 100.0 32 ............................ TAGACGTTGGCGAATAGTTGCGAGAGCAAATC 97488 28 100.0 32 ............................ ACAGCCCCAAACCGCCCGCCGTGGCGGCTACG 97548 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGYCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCACGCCATACTTTGAAACTTCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGGCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTATCCTTGTGCTGGTGGCCAATAATACGCGTAGAGTTGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGGGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTTACTGACGATTATTACGCTATTCTAT # Right flank : GACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCGCGGCGCAAATCATACCAAGTTTGCACGATCGAGCTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGTAGGTGACACAAGCCCCAGCACGATGTTGGATAAGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCCAGTTGCACTGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGGACAGGCAGCTTAGAAATCGCTGTTTGAACTGGCACGGCGAGCCGTGGAGTTCACTGCCGCACAGGCAGGTTAGAAAGGATTGAATGAGAACTCTTGTGTGCTGCTATATGCTTAACGTTGTTCGGCTGAATCAATATGAGTTAAAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 108378-111107 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUET01000004.1 Salinivibrio sp. IB282 scaffold4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 108378 28 100.0 32 ............................ TCAACTTCGGGTCATCAAAGTTTCCTTCTTCC 108438 28 100.0 32 ............................ AAACGAGCCTGTTCCAATCAGAACACCGGCTC 108498 28 100.0 32 ............................ TTTATAACCCGGCGAATTTCATCCACCGTATT 108558 28 100.0 32 ............................ GTTACGAAAACGCTTCATACGGTGTTTTTCAC 108618 28 100.0 32 ............................ TATCGGGGGCACCCGCCCCCTTTCCCTTAAAA 108678 28 100.0 32 ............................ AAGCAATGATGTTTCAGTTGAGCAATCAGAAA 108738 28 100.0 32 ............................ CAAGAAAAGACCGCCCAGTTAAATTGGTTTAT 108798 28 100.0 32 ............................ TTGGGGCCTGAGTCATACATTGGTCCCTCATC 108858 28 100.0 32 ............................ ACAAAGCCCCGCAGTACACTCACAGACATAAT 108918 28 100.0 32 ............................ TAGAAAGTTCACCCCCTCGCTGAGCGAGGTGA 108978 28 100.0 32 ............................ CGCCAGCCGTCGCGCCTGAGCGGTTCCGCGTG 109038 28 100.0 32 ............................ TGGAAAACAAATTCAACGCGCTAACCCAAGAA 109098 28 100.0 32 ............................ ATGATTCGCTCCTTTCTCAGTCTGCTGTCAGT 109158 28 100.0 32 ............................ TGTTGAACCATCGTGGTAGGTGACTTTTGGTT 109218 28 100.0 32 ............................ ATGTATATAGTAGCCACCAAGTAAAACAACGG 109278 28 100.0 32 ............................ AGAAAGAGCATCAGCCACCTGCGCGACTTTTG 109338 28 100.0 32 ............................ TCCCCGAAAAATCGTTTGATGTCACCGATAAA 109398 28 100.0 32 ............................ TGGCTGATCCAGACGTACAGCCCGCGCTCGAC 109458 28 100.0 32 ............................ AATCGGCGTCACGGCCTGCGCCGTCTACCTTG 109518 28 100.0 32 ............................ CCTTTAACTCGATTAAGCGCATGCACTTTCAA 109578 28 100.0 32 ............................ AAGACACCAGGGGCCAAAGAGTTTTACGGCAA 109638 28 100.0 32 ............................ TTTACCGACGACTGTGTAGCGCTCACCGTCGC 109698 28 100.0 32 ............................ GTGCAGTTGCGGCGCGCCTACTCGCACCTTGA 109758 28 100.0 32 ............................ ATAAACCTGTTTCAGCGCGGCCAAGAGGTATC 109818 28 100.0 32 ............................ TTAAAATTTAATTAGACATGGGCTTTCATACT 109878 28 100.0 32 ............................ CAGGTTAAAAGCACGATCAAAGCTCAAAAAGC 109938 28 100.0 32 ............................ ATGCCGATTAATGGCCTGACTGCGTTTCATGC 109998 28 100.0 32 ............................ AAGACGAAGCGGACGCGCTACGCGCAGCCGTG 110058 28 100.0 32 ............................ TATATTGTCATGGGTGCAGGCGGGAGACTTTT 110118 28 100.0 32 ............................ GTGTGTTCAAAAGGTAAGAGTTTGAGCAGGGC 110178 28 96.4 32 A........................... ATCTGCATTACCTGACACCTAAAAAGCTCACA 110238 28 100.0 32 ............................ CCTGCAAATCTCTCACTGTGGTCTGTACGTCG 110298 28 100.0 32 ............................ TACCAATCACGGCATTCATTATCTTTTTATGC 110358 28 100.0 32 ............................ CATATGCGCTGTTCAGTCTCACTGATTTTGAT 110418 28 100.0 32 ............................ TAGCCCCCGAATTTCTTCTTGGCATATTGAAC 110478 28 100.0 32 ............................ TTAGAAATACACGCCAAAATCAATTTTTGCGC 110538 28 100.0 33 ............................ AGACCGCAAAGGCTCTAGGTTGCTCTGTTTCTA 110599 28 100.0 32 ............................ TATCTTTTCTAAGCCATCAACCAAATATTGTA 110659 28 100.0 32 ............................ ATCTCGAACATATGCTCAGTTTATCATTAGCT 110719 28 100.0 32 ............................ ACGAAAGCCTGTGAGAACTTATGAGGGCTTAT 110779 28 100.0 32 ............................ AAGAGCTTGATGTGGTTATGGAATATACATTC 110839 28 100.0 32 ............................ AATCTTTCAATTCTTGGAATTGTTCGTGATTC 110899 28 100.0 32 ............................ TCGACGCAGAAGTGCCAACACTATCAAGCTGG 110959 28 100.0 32 ............................ ACAGGGTGAGACGGGCCCACAAGGCCCAGCTG 111019 28 100.0 32 ............................ ATAGGAGTAGCTGACGATGGACAAAGATACAG 111079 28 100.0 0 ............................ | G [111105] ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGACTATGCCTACTTCAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGACCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGCGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTTGCTGCCTTTTATTCAAGTGACCAGCCTTTCGAGCCAAAAACGAGCAGGGCGGCCCAATACGGAAGAGTTTGCTTTGTATATCGAGCGGGAGACTACCAAACAGCCGCCAAACAAGGACCAACCCTTCACCTGTTATGGGCTCAGCCGACGCGAACCCGATAAGCAATCTGCGGTACCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGTTAGTTACAGCAGGCCATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTACCTGACGATTATTACGTTATTCTATT # Right flank : GATTAACGACCTGGCCGTCTGCCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCGCGGTGAAAATCACACCAAGCGTGTACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGATGTTATTGGCTTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGATGTTATTGGCTTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //