Array 1 16922-18451 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXG01000143.1 Pseudomonas aeruginosa isolate T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16922 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 16982 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 17042 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 17102 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 17162 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 17222 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 17283 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 17343 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 17403 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 17463 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 17523 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 17583 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 17643 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 17703 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 17763 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 17823 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 17883 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 17943 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 18003 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 18063 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 18123 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 18183 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 18243 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 18303 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 18363 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 18424 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28614-27325 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXG01000143.1 Pseudomonas aeruginosa isolate T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28613 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 28553 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 28494 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 28434 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 28374 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 28314 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 28254 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 28194 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 28133 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 28073 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 28013 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 27953 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 27893 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 27833 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 27773 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 27712 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 27652 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 27592 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 27532 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 27472 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 27412 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 27352 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //