Array 1 638-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPAZ01000075.1 Streptomyces ipomoeae strain 88-35 contig_287, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 637 29 100.0 32 ............................. GCCTCCTGGACGTTCCCGCCGCCCTCGATGTC 576 29 100.0 32 ............................. TCGTACAGCGCGTCGAACCCCGAGGGTGACCA 515 29 100.0 32 ............................. CGGTACATCAGCGCCGACGCCCCGCACTTCAA 454 29 100.0 32 ............................. GCCGCCATCTGGCTCGGCCTCACGGACCCCGA 393 29 100.0 32 ............................. ATCGAGTCGTACATCCGCCTCTACATCGAACC 332 29 93.1 32 ................T.A.......... TCACGGCCTATAGCGAGGTCCCGAACGAACTC 271 29 100.0 32 ............................. GGTGTCACGAAGGTGGGGATGCCGGGCACGCT 210 29 100.0 32 ............................. TCGATCGGCTCGACCCGCCGAACGAAGACGCC 149 29 96.6 32 ..................A.......... GCGATCAGCAGGACCGCACCGAGGACGATCAA 88 29 96.6 32 ............................A ACCAGCTCGGGGGCGGGGGCGATCGAGGGCCG 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGCTCCCCGCACCCGCGGGGGTGGTCCC # Left flank : CCGCACCCGCGGGGGTGGTCCCCCCTCATCCCCCTCACCCTCCGCCTGGAGCT # Right flank : C # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1431 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPAZ01000135.1 Streptomyces ipomoeae strain 88-35 contig_313, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 27 93.1 32 --........................... CAACAGCACGTGCCGGTGGGTGCCACCACCGG 60 29 100.0 32 ............................. CGCAAGCTCGTGCTGCCCATGGACGAGATGTG 121 29 100.0 32 ............................. TACTGCGGGTTGCCCGACGAGAACGGGAAACC 182 29 100.0 32 ............................. CAAAAGCGCCTTCCGCCCCTCAAGGAGGCAGC 243 29 100.0 32 ............................. CTCGACGACCCCCACGCCATCCTCTCCGCCGA 304 29 100.0 32 ............................. TCATCACCGCCCGCGCCCGAGCCCGGGTCAAC 365 29 100.0 32 ............................. TGCGGGCGCGGTCCCACTGGTGGGAGACATTG 426 29 100.0 32 ............................. TACCCGGCGCCGCCGAGTCCGAAGAAGGCCAT 487 29 100.0 32 ............................. TCGTTCTGGAACGGCACGTAGTCCTCGGTCTC 548 29 100.0 32 ............................. GCTGAGCTGTGGCTCGACTCGGCGGATGATGT 609 29 100.0 32 ............................. CCCGGCACGCCGCACGCCGTGACCGGGGAACG 670 29 100.0 32 ............................. CAGGACTTCGGAGACACCGAGTGAGACAGCTC 731 29 100.0 32 ............................. CACGGTCATCACCCACGGAAGCGGCTGGCCGA 792 29 100.0 32 ............................. ACGCTGACCAAGTACGGGAACGTCACCCGCAG 853 29 100.0 32 ............................. GGGGAATTCGTATGAAGCTCAGAACTCCTGCG 914 29 100.0 32 ............................. TCGGCGGGGGAATGAGTCAGGAAGTCGGGCGT 975 29 100.0 32 ............................. GCCCGGCGCAAGCTCGATCTCCTTGTTCAACT 1036 29 100.0 32 ............................. GGTCAGCCCCTGGAGCGTGGTGTTCCCGGTGA 1097 29 100.0 33 ............................. GCGCTCGACGTCGCGACCACTGACCAGCTCAAG 1159 29 93.1 33 TG........................... TCGCCGGGCAGTACACCCGCCTGGGTCCCGGCC 1221 29 100.0 32 ............................. CGAAAACCTCCTGTGGCGGGGCCTTCTTGTGC 1282 29 100.0 32 ............................. GGACGCGGCAACACCGCAGCCGGACACCTGTG C [1300] 1344 29 100.0 32 ............................. GCGGCCTGTGTCTTCTGCGCCTGCGCACCGAA 1405 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGCTCCCCGCACCCGCGGGGGTGGTCCC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 577-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPAZ01000362.1 Streptomyces ipomoeae strain 88-35 contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 576 29 100.0 32 ............................. ACGCCTACGGCGGGGGCGAGTTGATGGGATTC 515 29 100.0 32 ............................. CTTGTTGCAGGTGACGCGGAACGATGTGCGGG 454 29 100.0 32 ............................. GACGAGCGCGGGTTCTGGTCGAGCCTCATCCG 393 29 100.0 32 ............................. CGACCGAGCCGAGGATGCGCAGGCTGGAGAGG 332 29 100.0 32 ............................. GTCGACAACCGTGACGTGGACGACAACGGGAA 271 29 100.0 32 ............................. TACCAGGCCTGGCAAGACGCCGCCGGGCACTC 210 29 100.0 32 ............................. TTGATGGCCAACACCGGCAGTTGGGAAATCCG 149 29 100.0 32 ............................. GTTGCCATCACCCGCGTAGATCGCGACGTGAT 88 29 100.0 32 ............................. GCCACCCGCAACGACCCCCGACAGCTGGCGTC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGCTCCCCGCACCCGCGGGGGTGGTCCC # Left flank : ACAGGTCGCCTCGGGGCGCAACTACGCCGACGCAGACGACCAGGAAGCAGTGCTCTGGTGACCGTGATCGTTCTCACCAACTGCCCGCCCGGACTACGCGGATTCCTCACCCGCTGGCTCCTGGAGATCTCCGCCGGCGTCTTCATCGGCAACCCCTCGGCCCGCATCCGAGACGCCCTCTGGGACGAGGTCCAGCAATACGCCGGACAAGGCCGAGCCCTCCTCGCCCACACCACCAACAACGAACAGGGCTTCACCTTCCGCACGCACGACCACACCTGGCACCCCACCGACCACGAAGGCCTCACCCTCATCCGCCGCCCCAACACCAACGCCCAACCGACCACCAGCGCCCCCAAACCCGGCTGGAGCAACGCCGCCAAACGCCGCCGCTTCACAAAGAGATGAATCACCAGATGCCGGACATGCATCAAATGCCGGAACCTGCACAACTACTGGAAAATCTAACCTGCCGAACCTAAAACAGCAGGTCGCGAAGT # Right flank : C # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10294-11483 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPAZ01000362.1 Streptomyces ipomoeae strain 88-35 contig_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================== ================== 10294 29 100.0 32 ............................. CGTGCGATGAGCTGGTTCGTGATAGCCCCGTC 10355 29 100.0 32 ............................. TCGGCGAACTTCGCGGTGACCTGGTTCAGGTT 10416 29 100.0 32 ............................. TGCACGCCGCCGACGACGAGGACCGCCATGAA 10477 29 100.0 32 ............................. GGATCGACGTCGTTGAGGCGGCGTGATGCCGT 10538 29 100.0 32 ............................. GGCGGCCGACGTCCTGAAGCGACACCTCGTCC 10599 29 100.0 32 ............................. GCCGTCAGGCGCATGCTCGGACTATAAGGAAC 10660 29 100.0 32 ............................. AGCACAACCTCCCTGGCCGGGTGAACCAGGTC 10721 29 100.0 32 ............................. GTCTCCAGCCCGGGGACAACGACGCCACCGAG 10782 29 100.0 32 ............................. GGCCCGGGCGTCCACAAGAACGACATCCCGCC 10843 29 100.0 32 ............................. CACGCTCGTACCCGTACCACCCCCAGTTGGAA 10904 29 100.0 32 ............................. GTGGACCCGTGCCGCGCTCCACCCCACCCGAC 10965 29 100.0 32 ............................. AGCACGAGGAAGCCGAGCGGAAGCGTGTTCAC 11026 29 100.0 32 ............................. TTCTTCCTGAACTCCGCCACCCCGGGCGGGGT 11087 28 79.3 50 ............-GT...T.....C...G TACGCGTTGCAGAGATAGCCCAACCCTAAGTAGTCGCGTAAATTCATAGA 11165 28 79.3 33 .........ATGTT...........-... TGGTGCGGTTGAGGCTGGGGACACCGTGAAGCT 11226 29 93.1 31 ........................A...T GGACCGGCCGCGCGTGCACCTGCCCGACCGC A [11250] 11287 28 82.8 33 .....T.....G.T.......T...-... GAATGGGGATATGAACGGCAATTCGGGCGTCTC 11348 28 72.4 78 ........T.TG..T.T....-.T.C... ACGGTGTTCTTCGGTCCCGCAGTGTGGTGGCAGTGCTCCCCGTGTCCCGTCGTAGAGTTCGTCGCGTGGCTGCCAGCG 11454 29 75.9 0 ...A....T..G..T..A.A.T....... | T [11479] ========== ====== ====== ====== ============================= ============================================================================== ================== 19 29 93.8 36 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCGATGTCGTGCACACCCGCCAACCACACCGCCAGCCGCCGCCCATCCCCCTCACCGCCCGGCAACGCCTCCGATATCAGAGCCCGGACATTCGCCGGCAGCCACCGGTCCCACAACAGCCCCGCCACCGCGGCGCTGTCCTCCATATGCCGCCACAACGGCAACCAACCCTCACTGTCCCGGTCATGCTTCGCCCATACCGTCCGCACCGGGCCCTTCAGCCGATCCCCCAGCCCAGAACCACACTCTCCGTCATGCGCCATGTCAGATACATACAGGCGGACACCGCCCGCCAGCCGCCTCTCCAACAAACCGAACACCATTACGGGCGAATACCGTCCAGTGCCACGTATCAGCGGGTGTGCCGACGTATGATGTCCGGCCAACCCTGCGCCAGTGACCAACTACTGGCGATTCAACACCTAATGAGTGAAATGACGGAATCGGTGAAAGTGCCCTCGAACAGCACCCGACCGCTATAAACCCGCAGGCCACCGAGT # Right flank : CACGAACGTTGCGCCAACTGTCGTTGTGCGTGGGTGCTCCGTGCGCCTTGCAGAGATGCCCTCAACCCTGTGTAGTCGCGTCAGTCAGGAGTGTTCCGGCTGGCCGACGCCCCAAAAGCGTTCCGTCATCCGGGCCCTGGCCAGCCCCGCGAGCGTGAACCCGACCGATACCAGCATGGATGGCAGCCGCTCAGTCCGCTGACCGAACCGGCGGGTGAGGCCGGGCGCCTGCTCAGTGAAGGTCTTGGGTGGACAAGAACCCTCCGCTGGCGGATTGAGGATGCGCTTTGGGGAGCCGCCTCGACCGGGGAGTGAGGGACTGCTCAAGCTGCGTCACAGGTTCAGTTGTGATGGGGAGTCAGGAGTCAGGATCCGACTTCCTCGTCTGTTGGTTTCCTGGAAACGGGCAGTGACGAAATCGGTCTCTTCAGGAGACAGGGCGGCGTCGCGTATGGATAGCGATCCTGCCATCCCGTTCAGTCAGTCTAATTTCAACCCGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-527 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPAZ01000214.1 Streptomyces ipomoeae strain 88-35 contig_92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 10 29 100.0 34 ............................. GCTGAGCTGTGGCGTCGACTCGGCGGATGATGTC 73 29 100.0 29 ............................. CACGCCGGCACGCGGATCACGCGCGCCCT G,G [75,83] 133 29 100.0 32 ............................. GAGACGGGCGAGCCGGAGACGCTCGACTCTCT C,G [135,138] 196 29 100.0 32 ............................. CACCGGAGCCGGATGTGGGCGGCTCCCACGGC 257 29 100.0 32 ............................. TCCAGGTGGCTGCCGGTGATCCAGACCAGTTC 318 29 100.0 32 ............................. CAGGAGTTCGAGCTGACCTTCGAGGCCCTGGA 379 29 93.1 32 .....................A..A.... GACCTCCCCCGGATAGATCTGGCCTTCAGTGA 440 29 93.1 30 ....................CA....... GGCACTATGGACCGTCACCACCGCGTCCAC 499 29 93.1 0 .................A...A....... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 97.7 32 GTGCTCCCCGCACCCGCGGGGGTGGTCCC # Left flank : CTCGGTCTCG # Right flank : CCCGTCTCCTCCGGGCAGGATGGTGATACGGCCTCCGCCCGCTCCAGCTCATCGGGCAGGAACATGAGCTGCACAGTAGCGAAGTCGAGGTTCGCTTCGCCCAGGGAGGCGACGTCGTCTACCTGCATCCACCAGATCTGCGACAGGCTGGGCCTCGATCGCCGCGAGCGTACGGTGGTTGCCCGACAGCGCCACTAGCCGCCCCGTCTCGCGGTCGTTCCAGATCAGCAGGGTCGAGGTCAGGCACCCGTCGCGCTGCCGTCCTGGCCCTGGGGGCCGCCCTTCGCCAGCCGGGCCGAGCATCGCGAGTCCGTCCGCCGCACGTTGCTGCTGCTCCTGCGCCTCGCTCCGTGGTACCGCACACGCGGTTGATGGCGGTCCGGAGCGGTGCATGGTCGGCTGGTTGGGCCGGATATGGTGGCAACTGCGATGGCAGAAGCCTCAGGCCGTGATGTCGCTGGACTGCTTGAGGACTTCGGCGCGGGCACATGGCAGCATGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //