Array 1 230044-229876 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVQY01000001.1 Streptococcus chenjunshii strain Z2 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 230043 36 100.0 30 .................................... GTGTTTCTCGTCCTCAGCTTTTTAAAGTTT 229977 36 100.0 30 .................................... CTACACGGCCAATAGGAAAACCTACAGTAG 229911 36 94.4 0 ................A.................G. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 98.1 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTAGAACTTATTAAAGTTTTGGGGGTAAAAGTAGAAACAAGCAGTGATACTGTTTTTGAAAAGTGCTTGGAAATTTTACAAATTTATAAGTATCTTAGTAAAAAACGTTTGTTAGTCTTTATCAATAGCGGCTCCTATTTAACAAGAAAAGAGGTTAAAGAGCTGCTTGATTATATTAGCTTAACCAACCAAACAGTCCTTTTTCTTGAACCGCGTAAGCTCTATGATTTTTCTCAGTATATTTTAGATAGAGACTATTTTTTAATTGATGGAATAAAGCATTAGGAAGGATTGCTGGAGCTAATACCGATAATGTAAAAGGAGTTTAGCTGCTTGTTTTGATGAAGATCAGAGCATCAATAGAAAATAGCGCTGAAACCTTGATTTTAAAGCATTTTTTAGATAAAATAGAAGTAATAAAATGGAACTGTTTGATACTGAAGTCTGGCTGGGACGAATAGTGCGATTACGAAATTTCGTAACAAAAAATGTTCTACGAG # Right flank : CAAGAGCACTGCAACTGCGTAAGTGCTAGTAGCCCCAGTCCGCTGGTTTTAGGATTTGTGTTCTCTTCTTTCCTTGCAATCTGCCTTAGTTAGCGGTACAATAGGGGTGAGGGAAGCGTGCTGCTTCTTCCTGAAAGGAGGTTGTCTTATGCTTTACTTAACTGTTTTTTTGGTTTCTCTTGCTTTGCTGGTAGCAATCGGAATTCCTTATGTGATTGATTTGTTTAAAGCAATGGAAGCCTTTAAAAAAGCCGATGGTGAATCTCTCCACAGTCAATTATGGGATATGTTCGGATTTCACCGTCATTTGCATGGATAGGCAGGTTTGCCTGCTTTCAGATGAGAGACAGATTTTTTTGGGTCTGTCTCTTTTTATTAAGGGATAAAATTCGTTAAGAAGTCCCTGATTGCTCCTGCTATGATGAATAGAAGAGGGCAGCCGGCTGTTGAGTTGTTAAAACTTTCGTCCGTTACGGCACTTCGTCAGCAGAGCAGCAGAG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 243432-242616 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVQY01000001.1 Streptococcus chenjunshii strain Z2 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 243431 24 100.0 37 ........................ CTAACTAACCTCTGTCATTCTATGTTTTTAAAAATTT 243370 24 100.0 37 ........................ CAAACTGATCTTTATTATCAACGACGTGTGTCCATTT 243309 24 100.0 37 ........................ TAATCTGATTTTGGAAATAGTGAAATACCAATCATTT 243248 24 100.0 37 ........................ TAGAAAATCTTGGCGCTATGGGTATGCCTTACCATTT 243187 24 100.0 37 ........................ TGGGCAGAATTTCAAGAAGCAGGCGTATTGTTTATTT 243126 24 100.0 37 ........................ TTCATTTGAGCTTAGCTTTACCAAATGGTAAATATTT 243065 24 100.0 37 ........................ TGACTACGATACAGAGACTGTATATGTTGACAGATTT 243004 24 100.0 37 ........................ TAGATTGTGTGTAAGTGTTGCGATACCTTCTGCATTT 242943 24 100.0 37 ........................ CAAACAGCTCCGCCTACTGGCTGATCACTGAAAATTT 242882 24 100.0 37 ........................ GGTTTCACAACCTCAAATTTGATGCCTCTTTTAATTT 242821 24 100.0 37 ........................ TAACCGTCCTCAGTCTTTTCATAAGGAACACTAATTT 242760 24 100.0 37 ........................ CGAACACAAATCGTAAGGAATAAGAAAGGTTGAATTT 242699 24 100.0 37 ........................ CTGATGGACAGCGTCAAAGGAGACTTCTACCTTATTT 242638 23 91.7 0 ....................-.G. | ========== ====== ====== ====== ======================== ===================================== ================== 14 24 99.4 37 TACCCGCACACGCGGGGGTGATCC # Left flank : ATGAAAATACTATTATAGAAATAGGAGCAATTAAAGTTAATCAAAATCAGATCGAAGAATTTGAGTATTTAGTGCACTACGATAAGGCGCTGCCAAAGAGTATAAGCCGGCTGACCGGGATAAGTCAGGAACTTTTGAATCGTGAAGGCATGGCCCTTTCGACTGTATTACAAGAATTTTTAAATTTCATCGAAAACCTGGACCTGATTGGTTATGGTATTAATTTCGATATAAAATTTATAAATAGGGAATTAGCGCAATTAAATTATCCTTTGTTGAAGAATAAAACGCATGATTTAATGAGAACTGTAAAAAATGAAAAGCTATTTTTACCTAATTACAAACTCCAAACAGTACTAAAGGCATATGGTATCGAAGAGAAAGTACCTCACAGGGCTCTTCCAGATTCAAAACTCATTTATAAGCTATCTACTAAAGTAAATAAATTTTGGAAGAAGTTTAATCATGAATAGCGACTTTATTGGGATCTTTTAGTATTT # Right flank : TCCTGCCGGAATTTTTCTACCATTGGTCAAGTTCCTTAAGGGATTTTCTTGAAAAAATGTTTTAATCGGCTATAGTTAGAGAGTGATTTCAGCTGTTTTTCTCAAAAAGTGCAAGCTAAAATAACATCTTACTTTGTCATTTCTTTGATAGGGTGTTAAGTGATATGGCAATAGATAAACTTGCTGATTTTGGGCTAATTTGTAATTGTAATATTTGTACACTCAAAAAGACTCCACAATCTCTGTCGGGGGTTCCCCGCTACAGAAATTATAGAGCCACTTAAATTTAGGCTAAGTCCGTTTTAGTTGTTTTCAAATGATTCAAATCTTTTTAGCAGTCTGAGCTATCTTAGCTAGTTTCTTTTGACGTTCTTGGTCACTGATTTTTTCAATTCCAGTTAGCTGATTGATTTTAACCGGTCGAATGCCGCAGCTTTTCAAAATCTGCCCCTTTAAAACTTTTCCGTAATCCTGAGCAAAGGGTGTAATAAAAGCCGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //