Array 1 862930-856455 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031459.1 Xanthomonas oryzae pv. oryzae strain JL33 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 862929 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 862864 31 100.0 35 ............................... TATGTCGGCGGCAAGAAGTCCGAAAAGCAGCTGCG 862798 31 100.0 34 ............................... AGGCGCAGGGGGATGTTGGTACGGCGCCAAGTTG 862733 31 100.0 34 ............................... TGCACCCGTACCGAAAGTTTGCAGGGGTGCGGTG 862668 31 100.0 35 ............................... CTGCGGCCCGGGTACGACTCAGTTGCAATGCATAT 862602 31 100.0 37 ............................... GCGCCCGTGGTCAAGCTTACGGAGACCATCATCTCCG 862534 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 862469 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 862403 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 862337 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 862271 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 862205 31 100.0 36 ............................... TCCGGTAGACGGGGATCTTGTGTTGATGAGGCAGTG 862138 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 862072 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 862006 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 861941 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 861876 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 861810 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 861744 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 861679 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 861614 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 861550 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 861485 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 861420 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 861356 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 861290 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 861225 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 861158 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 861093 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 861025 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 860959 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 860895 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 860830 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 860763 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 860697 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 860631 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 860563 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 860497 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 860432 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 860367 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 860301 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 860235 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 860170 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 860104 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 860038 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 859973 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 859907 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 859841 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 859774 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 859708 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 859643 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 859577 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 859510 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 859443 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 859379 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 859314 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 859248 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 859183 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 859116 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 859050 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 858983 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 858917 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 858853 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 858788 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 858723 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 858656 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 858590 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 858524 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 858457 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 858393 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 858327 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 858262 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 858196 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 858131 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 858064 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 857999 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 857932 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 857866 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 857799 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 857733 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 857666 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 857598 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 857533 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 857468 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 857403 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 857338 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 857272 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 857206 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 857141 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 857076 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 857010 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 856944 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 856880 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 856813 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 856748 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 856682 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 856617 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 856550 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 856485 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 99 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //