Array 1 42897-48175 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJOD01000001.1 Chryseobacterium indologenes strain CI_885 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 42897 47 100.0 30 ............................................... CTGCTCCAACAGGCTTACCTCCAAGGTCTC 42974 47 100.0 30 ............................................... ATTGAAAGATAAAGGTGTCAGGTTTTAAAT 43051 47 100.0 30 ............................................... CTGCTCAATATGAAGCTGTAAGGGAAAACG 43128 47 100.0 30 ............................................... AACATCTTTCTATTCCAAAGAAGGAAGAGC 43205 47 100.0 30 ............................................... AGAGGAAAGTACCTTTGTTATTGAGACTTT 43282 47 100.0 30 ............................................... TACTTCCAATACCATCCCTTTATTAACATA 43359 47 100.0 30 ............................................... GGGGCCATGAATCTGGAACATGTTCAGGAC 43436 47 100.0 30 ............................................... GAATATCTTGAAAGGCAAGCCCGGTCCGGA 43513 47 100.0 30 ............................................... AATCATTAATAACGGCCTGATCTGCACGGA 43590 47 100.0 30 ............................................... AGCAATAAGAAAGGCTTTTATCGAATCTAA 43667 47 100.0 29 ............................................... CAGGCTGTTATGTTTTCAAGGTGCGTTAC 43743 47 100.0 30 ............................................... TTTTAATCCGAATAGGTATGTTTTGAGTGT 43820 47 100.0 30 ............................................... TTCTGCTGTGGCAAGTTTGGTATCAAGAGA 43897 47 100.0 30 ............................................... TTGCCGGACTTTCTGTTCCTATTGAATTTA 43974 47 100.0 30 ............................................... TGTCAGGCAGTTGGAATATTGTCACTTGAT 44051 47 100.0 30 ............................................... AGCTGATGCTAACGACAGTTATCAGGGTAT 44128 47 100.0 30 ............................................... AAATTACCGAAATCACTGCCCCAGATAACA 44205 47 100.0 30 ............................................... ATATGAAGATTTTATATTAATGCAACTACC 44282 47 100.0 30 ............................................... TACATAATTTTCTTTTAAAGTGCCACCCTA 44359 47 100.0 30 ............................................... ACCCCTGTTAATGCAGGGGCTTTATTTTGG 44436 47 100.0 30 ............................................... TTTCGATAAAGAAGGAAATATGAGGCTTGA 44513 47 100.0 30 ............................................... TGGTACTCTCATCGACTTCGAGTTCTTCAT 44590 47 100.0 30 ............................................... TCCAAGAATTTCGTGATACTCCTAGATATA 44667 47 100.0 30 ............................................... AACATTGAGGAATCTCCGGAGCATCCTCAC 44744 47 100.0 30 ............................................... TTTTATAGCCGTTGAGCAAGTGGTGTCAAC 44821 47 100.0 30 ............................................... GTGTAACCGGAGTACCTTTTTGAGCCTCAG 44898 47 100.0 30 ............................................... GATTCGCTTCCGCGAATGCGCCGCTGACGT 44975 47 100.0 30 ............................................... AGCTCAACAGAAAGAACAGACAGTGGCAGG 45052 47 100.0 30 ............................................... CAGAAGTAGACAATATGAAGAAGGCGCAGG 45129 47 100.0 30 ............................................... ATCTCTACATTTTGAGTGAAGAATCCAAGA 45206 47 100.0 30 ............................................... AAACCAAAGACACGGAGGAGAAGGCAGTAA 45283 47 100.0 30 ............................................... TAGCGATAGCTTAGCGCAAAAGATCGGCGT 45360 47 100.0 30 ............................................... TATACGCGTTTTCGCCCTTTAGCATATTTT 45437 47 100.0 30 ............................................... AAGCCTTCTGAGAAGCTATCAGTGAGATAC 45514 47 100.0 30 ............................................... ACCAGTAATAGATGTAACCACCGGAAGAAA 45591 47 100.0 30 ............................................... GTTTCAAGAGACTTTTTCATCCTTCAGGCA 45668 47 100.0 30 ............................................... AAATTGAGGCTTGGTCTATACGCTGGAAAG 45745 47 100.0 30 ............................................... CTAACAATTGATTATCAGTACTTCTGTACT 45822 47 100.0 29 ............................................... TGAATCAAAACGAGTTGTAGTTGTAGCAC 45898 47 100.0 30 ............................................... TGAACCATATTTAGTGATCTTCTTAGTAAC 45975 47 100.0 30 ............................................... GTATAATCCTTTAAGGAACAAAGTCTCTTT 46052 47 100.0 30 ............................................... CGCTTCCCAGAAGGCTTTAAACGATCAGCA 46129 47 100.0 30 ............................................... CAGTATCGAACTTAACTAAGGCAGAAAATA 46206 47 100.0 30 ............................................... GCTTGAAGAGCATCATATTGCTCTTGGTAA 46283 47 100.0 30 ............................................... GTACCATGAATATACCAAATTCGTCAGCTT 46360 47 100.0 30 ............................................... CTTATAATACCTAGGAAGAGGACGAGACTT 46437 47 100.0 30 ............................................... AAAATGGCATCATGGTAGAATTCATGTCGG 46514 47 100.0 30 ............................................... GTGAATCAAAACGAGTTGTAGTTGTTGACG 46591 47 100.0 30 ............................................... TGTCCTAACTCAGTCTAATTCCACCTCTGG 46668 47 100.0 30 ............................................... TTTCTGTAATAAAGTCCCCAAAACGTTCGT 46745 47 100.0 30 ............................................... TAGTTCTCCTGGTTGCCGAAGGAGAAAGTA 46822 47 100.0 30 ............................................... CAACAATTTTTCTTGCAATTACTGTCTGTT 46899 47 100.0 30 ............................................... TATCTGCTTGTAAAAGTTTATTAAAAGAAT 46976 47 100.0 30 ............................................... ATATCGGGAATCTTGGAGTAGGCGCACAAA 47053 47 100.0 30 ............................................... GTATAAACAGCTAGAACGTTCTAATGCTAT 47130 47 100.0 30 ............................................... AGAAGCAAATTAACGGAGCCGAGGCAGGTA 47207 47 100.0 30 ............................................... AGACGGAGGTGAATTACTGATGACTGATAG 47284 47 100.0 30 ............................................... AGATTGCTCAAGATTACCCGCAAATGCTTA 47361 47 100.0 30 ............................................... TAAATGTTTGGAGTGTGCGTGTTCGGTTCT 47438 47 100.0 30 ............................................... GATCATTTAAAGCCTTCTGAGAAGCAATTA 47515 47 100.0 29 ............................................... CTAGGATAGTCAGAACTGTCTGCGAAAGG 47591 47 100.0 30 ............................................... ACTAGGATAATCAGAACTATCTGCGAATGG 47668 47 100.0 30 ............................................... CGGAGGTTCCGTTATTTCTTTGTTTGTTAA 47745 47 100.0 29 ............................................... TAGAAAATGTAGATGGATGGAAGGCCTCC 47821 47 100.0 30 ............................................... GTCTTGAATTATGTTTGTTTTTTCTTCGCT 47898 47 100.0 30 ............................................... TACTTATTATGGAGGTTCGAATGCTATGAT 47975 47 100.0 30 ............................................... CCCATCCATGGTAATGCGTAGCCTTTTGAG 48052 47 100.0 30 ............................................... AACGAGGTCATGAATCTTACATTCTTCCCT 48129 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 69 47 100.0 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : ATGTTATTCACCACAATAAAACTCGTTAAGCAAACGAGCGTTATGCAGCTCTTCTTTTCGCGCGTCCTCATATGTTGCGTTATGAGAACCCGACCCCCAGCATATTATATCATCTAATACTTCGTCTGTACATCCTATCAGGATGCCGACTGTTTGACATTGCATTTTTGCCTTTTGTGTTTCCTTTTGCTCTTTCGTTTGTAAATTTTCTTTGATCTCTTTTTTGTCTTCTTTTGCGCTCATTAGGCCAGCTACACCAAATGCAGTTAATAAAATTGTTTTTTTTATTTTTTTGGAATTTTGTGGTTAAAATATTTTTGTAAATAAAAGATTGATCAGGACTTTTATTTCACTTTACATAGATATAAAAAATTATTTAAAAAGATTTACGGCTATCCGTAAAAGAATAAATAAAATTATGCATCAGTAGGAATAATACTGCGTAGTTTTCAGCTTTTACAATGGACAATTGCTGAGCTCGTTCGCTTTCTGAGCTTGTA # Right flank : CCTCAAAAAACAATCTACTGATTTTCAGTAGATTGTTTTTGTTTTTAGGATTTAAAAATTAGAATAATTCAAGCTGTTGAAAGGTTGGAGGGGGTTCTTCTTTATTTCTGGCAAAGAATATTTCAATATCTCCAAACTGTTTGTCGGTAATGCACATAATTGCAACTTTTCCGGCTTTTGGAAGCATAAACTTCACTCTTTTAATATGAACCTCAGCATTTTCCCGACTTGGGCAATGCCTTACATACATCGAAAACTGAAATAAGGTAAAACCATCATCAAGCAATGATTTACGAAAGCGGTTGGCATCTTTCATATTGGCTTTAGTCTCTGTCGGCAAATCATATAATACTAAAACCCACATAATTCGATAAGCATTAAACCTTTCGGCATTCATATCAGTTCAGGATAAGAGATCAGGCGTTTTTCTCCTGTATAACATTTATACAGTGATGTAGCTGTTATTTTCACAGCCACCAGTAACGGCCTGGTTTTATCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //