Array 1 1087-2013 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYV01000020.1 Salmonella enterica isolate STY63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1087 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1148 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1209 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1270 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1332 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1435 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1496 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1557 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1618 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1679 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1740 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1801 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1862 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1923 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1984 29 96.6 0 A............................ | A [2010] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 312154-313646 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYV01000001.1 Salmonella enterica isolate STY63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 312154 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 312215 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 312276 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 312337 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 312398 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 312459 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 312520 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 312581 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 312642 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 312703 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 312764 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 312825 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 312886 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 312947 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 313008 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 313069 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 313131 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 313192 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 313253 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 313314 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 313375 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 313436 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 313497 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 313558 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 313619 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //