Array 1 313748-315457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083262.1 Pasteurella canis strain HL268 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 313748 28 100.0 32 ............................ AGAACATGATGAGGTATTAATCGAGTTACCAG 313808 28 100.0 32 ............................ CGAGATTTTAAAAATTTTAGATAAAAGGAAAT 313868 28 100.0 32 ............................ TTTTGCAAATAGAATCACATGGTTATTTGATG 313928 28 100.0 32 ............................ TAATTCAAAATAGGGCATTGGTTCATCAGAAG 313988 28 100.0 32 ............................ ACCTTTGCTGGCAGTGAGGTATGGAGATTCAT 314048 28 100.0 32 ............................ GAACTCAAAACACCTTTCGTTATATTGAACCA 314108 28 100.0 32 ............................ TCAAAAGCCCTAGCATTAGTCCGACAACTTTA 314168 28 100.0 32 ............................ ATCAAAGCTTTTATAAAGTTTAAAAATTTTCT 314228 28 100.0 32 ............................ ATGGTGTCGCAACAGTGACGGTGAGTTTTCGT 314288 28 100.0 33 ............................ AAAACCAAACCGCCGCTTTCACAGCAAGATCTA 314349 28 100.0 32 ............................ GCGGTCTCAGCCAAGACGTGTAAAGTCTAGCG 314409 28 100.0 32 ............................ TTAACGCTGCATTTGAAGCGGCTGTACAGCAA 314469 28 100.0 32 ............................ TCAAAAGATTCTTTTTGATAGATTGGATTCTT 314529 28 100.0 33 ............................ TGATTTCGCAACGTCATTTGAAACAATCGCAAC 314590 28 100.0 32 ............................ TTAACGCTGCATTTGAAGCGGCTGTACAGCAA 314650 28 100.0 32 ............................ TCAAAAGATTCTTTTTGATAGATTGGATTCTT 314710 28 100.0 32 ............................ ATCTATTTCAAAAATACAAGTTCTATCTCTGT 314770 28 100.0 32 ............................ TTTGCCATTTTTTGTGGGGGTGGCGCGGCAAC 314830 28 100.0 32 ............................ TAGTAATAAAATTACACCCGAAAAACTCAAAG 314890 28 100.0 32 ............................ GTGTTGGCTTAACTGAATTCGGACCACTTCCA 314950 28 100.0 32 ............................ GAGTCCGGTACTATCAATATATCTACGGAAGA 315010 28 100.0 32 ............................ AAGTATTGAGAATTCATTGCATCTAAATCAGA 315070 28 100.0 32 ............................ AATTCGTGTGCGTTGGATTACTAAAGAGCAAG 315130 28 100.0 32 ............................ TATCATCGCTAAACTTGCCGAACATTACAAGC 315190 28 100.0 32 ............................ AGCTTTATGTGCAAGATTTAATATCATCGCAA 315250 28 100.0 32 ............................ TTGAAGTTCCAGATATAGTAAGACCGCGCTAG 315310 28 100.0 32 ............................ AATAAAGAATATGAGAACAGGTGAAGTATTAA 315370 28 100.0 32 ............................ GATTTAGATTTCATAGGATGACTAACACCAAA 315430 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : GAACTCACACGCTCGAAAGTAATGGTGATGTCCTAACATCTTCAGTTTTTTTTAGCTCTGAAGTGTTAAAATCATCACAAACAAAGTATCTGATAGGTGGAGCTTATTACTGGGCTGGCGGATGGAAAAATATTAGAATTGAGGTTGTAAGCGAAACACAATTAAAAGTTATTGACTTATCTGGGATGTATTTAAAGAAAATAACTGCTAAATAAAAGGGCCTTTAGCCCTTTTTTACATAAAAATTAAATAGAACGTCAAATGAATAATTGTGATCTTCAACACAGACAATGATTTTAATAATGTTAGAATTTAACTGTTATGGGCTAAGCAATAAGACAACTGTGCTCTACTCCTAACCTAATTTATAACCCTTTTTTTCTAACTAGCTAAATTAACTAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCCTTCAGATGTTCTTTAACAATTTGAAGAATAAATAAATTTTTATTAATATTATTA # Right flank : AGCTTTATAGTATTATTGGACAACAGTTATTGCAAAATGGAACGACATTCACCAGCAACGTAAGATTCTAGAAGAAAATGAAAACGAATCAAAAAAGCGCGGTAGCGAAGCTGAGCGAGTATTGTCAAAACGAAAAATTGAAAAACATATTTATGATGTGGGAATAAGTCGTTTAGATAGAATGGAACCTTTGTTGAAATTTTAAAGATATGGGGAAAATACCCCATACCTTTATTATTTAAACGAAGTTTTCAAAATACCCATAAGTGGATAATTCTACGCCTTTCTCTTTTAAATAGTCTTCGATTTCTTCTTCTGTTTTAAAGTTCTTAAAATTTAATGGTAGAACATCACCGTTTGGAGAATTTAGTGTTCTAGATTGATTGTCTTGCATAAGTGATTTACATACTTTGATACAAATAGGTTCAATTTCGTTAGGATCAATATTTGCAGTTGAAAATCCAGTAATATAAGGAGCTTTGATCTCGGAATTTTTTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1632028-1630560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083262.1 Pasteurella canis strain HL268 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1632027 28 100.0 32 ............................ ATACTGGATCTGCAGGTCTGTCCATTACGATA 1631967 28 100.0 32 ............................ ACGATAACGCCAACCATCGCCGCTTGCTTCGC 1631907 28 100.0 32 ............................ GATTGCAATACCAGCAATAGCTTTCTTACCGC 1631847 28 100.0 32 ............................ ACAAAAGACAAAAGAGCTGATTGACGAATAAA 1631787 28 100.0 32 ............................ ACTGACAGTAGGAGATGAAGGAATAGCATTAT 1631727 28 100.0 32 ............................ GTCACGTCTAACCTTGATTTTGTTAATATCGC 1631667 28 100.0 32 ............................ TTAATTCGAGGGCATTTTTTATTTTAGACCTA 1631607 28 100.0 32 ............................ CTGCAATTCCAGCAGCACTTCTGTCGCATTTA 1631547 28 100.0 32 ............................ ATCAGTTTCTTTTGCGCCTGTTAATCTGCAAT 1631487 28 100.0 32 ............................ CGCGCATTATGAATGCAAACGATGAATTACGC 1631427 28 100.0 32 ............................ TTTTTCATCTTTAACCCCCGAATAATAGCTCA 1631367 28 100.0 32 ............................ TAGATCTTTGATTGATAATATTCGCACTGATT 1631307 28 100.0 32 ............................ TAGCACATTAATGCACCGAGGAGAATAGATTA 1631247 28 100.0 33 ............................ AATTGCAATACCTGCGATCGCTTTCTTACCGCT 1631186 28 100.0 32 ............................ AAGCGTGACTAAGTATTTGCCGAAGTCTTTCT 1631126 28 100.0 32 ............................ GATATGAAAGCCCTTACTATCTTCAATGTAAA 1631066 28 100.0 32 ............................ GCGCGGGTGATTTAATTTGTTTAGACGAGATT 1631006 28 100.0 32 ............................ TTTTCATCTTTAACCCCCGAATAATAGCTCAC 1630946 28 100.0 31 ............................ AATAAATTGCATGTCTTTTTTTGTTGCAACA 1630887 28 100.0 32 ............................ CACAGCAGTTCCAGTGAAAAGAATATCACCAT 1630827 28 100.0 32 ............................ GATTTGCCCCGTCAGTATTCTAGAGTAACATT 1630767 28 100.0 32 ............................ TAGCCAATGAATGGAATACGTCTAATTAAAAA 1630707 28 100.0 32 ............................ TCTAAAGTAGTTCCAACTGCTAACGAGAACAG 1630647 28 100.0 32 ............................ GATTGCAGCGGTGATTGCACTGATTAGTGCAA 1630587 28 82.1 0 ....................T.C.T.TC | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : CGGCTTTATCAACAATTACCACAAGTAGGATTGCAGGATTATGCGTTGATCAGTAGTGTAAATAAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGTCGTGTGCATCGTAAAGGACAAAGTACGATTCGTCGCACAGAAAAGTTCCTGAAGAGTATTGACAAATGGCGTGAAGGGATTCGTGAAGAAATGCAACAACGCCAACAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGCACAAATCAGTGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACGGTGCCACACTTCTAACCTAATTTATAACCCTTTTTTCTAATTGGCTAAATTAACCAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGCTCTTTAACAATTTGAAGAATAAATAAATTTTTATTAATATTATTA # Right flank : TGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTTGTGCGCAAGACACCTTATATTGCCTCTTCAGATTTAAAAACCATAATGCATTCTAAAAGGGCTAATATTTATTATTTAGAACACTGTCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCCAATACTAGTTGCCTGTTATTAGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAATTATCAAAAGCAGGGGTAATGGTGGGGTTTTGTAGCGGCGGTGGTACGCCTTTATTCAATGGAACAGAAGCAGAAATTGGCTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATCTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1678773-1678085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083262.1 Pasteurella canis strain HL268 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1678772 28 100.0 32 ............................ AGAACATGATGAGGTATTAATCGAGTTACCAG 1678712 28 100.0 32 ............................ TTTTATCTTTTTCAGTTCAACAAAATCTGAAT 1678652 28 100.0 32 ............................ AATTTATCGCGACGTTACTTATTTATCAGAAT 1678592 28 100.0 32 ............................ AGCAGCCGTTTCTATTTCTTCATCTGTCATTT 1678532 28 100.0 32 ............................ TCCTATCGAATATCAATACGTTTTATAAATCG 1678472 28 100.0 32 ............................ ACCACCCAAAACAGAATAAGGGGCAACAATGA 1678412 28 100.0 32 ............................ GCATTTCTGCGGGCATATAATGTTATTAAGAA 1678352 28 100.0 32 ............................ AAACTTAGTGAGATCTAACTCAAATAATTCAA 1678292 28 100.0 32 ............................ TGAAGACCAGTGATAGCAGATTGAATATCATA 1678232 28 100.0 32 ............................ AATGCTAGAGCGGATGTTGTTACGCACTTGGT 1678172 28 100.0 33 ............................ ATTCACAATACGTACAATCTTTGTAGCTATCAT 1678111 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCAGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGTGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCACGTACTATTGAAGGTCTAGAGCCTCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAGTCAGCAAAAAGCAAAAAGCGCGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAACACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTGAGCCAAACTGATTAATTTATTATACAGGTAACCCTTTTTTCTTAATGAGTTTTTTATCTAATAAGATCAAAGGGTTATTTTTATAGCTAAAAAAAGGGTTTTCGTATATAAAATGTGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCAAA # Right flank : CGGAAAATAAAGCATTGGATACTAATTGTTGTGCAAGCCAGTTTAGTCTGTTTTGCCTATTTTATCGTTGTACATTTTGTTTTTAACTTGATAAGAAGGACAAAAAGACAGCCGCACTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAGTGCGTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCTTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAATAATGCTTGCCCACCAGCTTCGGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATTAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCTAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //