Array 1 3748-911 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVE01000001.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3747 36 100.0 38 .................................... TCCTGGGAGAATCGCTCCCAGCAGGAGGAGTACTACGA 3673 36 100.0 36 .................................... TATAGTATTTGCAATCAAAACAAGACATGAGAAATA 3601 36 100.0 38 .................................... TAGAACTGCATCTTGTAGTAGACCTTTACTGCAATCAA 3527 36 100.0 35 .................................... TGAAATTGTTAGATGAAACTAACCTCATACATCCT 3456 36 100.0 38 .................................... CTTGAGACATCCCAAGACATGTCAGGGAAGGCTTTCCC 3382 36 100.0 37 .................................... GGATCGCTATAGACTGATAGTCTATAGACATTTTAAA 3309 36 100.0 38 .................................... GTGCGGACTCGTAAGAATACATCTTACAATTAAAACAA 3235 36 100.0 37 .................................... CTTCGATGAGGTTTAAAGGGATTACTCTAGAAGGTTA 3162 36 100.0 38 .................................... CCCATCTATAAGGCAGATCCACTGCTCGGGCGTACCCT 3088 36 100.0 37 .................................... CCGTGGAACTCTAGTCCCTCGAAGAAACAATAGTTTG 3015 36 100.0 35 .................................... CGTATTTATCGTTTATGATACCCATTAAACCTTCT 2944 36 100.0 38 .................................... CAGCCAAAGATTTAGGCCCTTGACCATAGTCTCTGAAT 2870 36 100.0 38 .................................... CTTTTTATCTCCTCTATTTCCAATTCGGTTTGAGTTAG 2796 36 100.0 35 .................................... GAGTCTAGTATAACATTTCTCTCCTCTTGAGTTAA 2725 36 100.0 37 .................................... TCCTCCGTCCTGGGTGGTTGTACCACAGGTGGTTGAA 2652 36 100.0 39 .................................... TTTCTACTTACGCTTCTTGGTGGATTAGACAAGCTATAC 2577 36 100.0 39 .................................... GTCCGTTTGAATAATTGTTCCATTGGGATAAACCCAATG 2502 36 100.0 37 .................................... TTTTAAATGTATGGTATTGTTTTGAGAAAGAAGAGAA 2429 36 100.0 36 .................................... TTTCAGTAACGAGGAGACCCCCGTTTACATATTCGT 2357 36 100.0 38 .................................... CATCTTGTACATTTATCAGTAGCTCCCTACTACCCAGA 2283 36 100.0 35 .................................... TCAAAGAGCATTAAAACAAGAATTATCACATCCCA 2212 36 100.0 38 .................................... TCCTAATTCATACTCACTTGTGTAGAAGTTGCTGAACT 2138 36 100.0 38 .................................... CATCTTGTACATTTATCAGTAGCTCCCTACTACCCAGA 2064 36 100.0 41 .................................... TTACGATGATATTCTCTCTTCCCACGTCGAGGAGTATGGGT 1987 36 100.0 38 .................................... TGACATTACCCACCGCATTACCCAACGAAGTATTAGAA 1913 36 100.0 40 .................................... GTAGATAGATTGCCAAGGGCCAGAGCGAACAAAAATATAA 1837 36 100.0 42 .................................... TTTCGCTAGTACCTAACGGTTTCAATAGGCGTATAAAATACC 1759 36 100.0 37 .................................... CAAAATGATCTTTGAGATCCTGATAGTACCATCGAGG 1686 36 100.0 41 .................................... TACCTTAGCTAGGTAGTGAAACCTCATCCGGTCTTTATTTA 1609 36 100.0 37 .................................... CTTCCTTCTCTTCCTCTTCTGCATATGGATTAAAATT 1536 36 100.0 36 .................................... TTGAACGTTCTTGCTAAAACCTTCACGACCTTCTTT 1464 36 100.0 36 .................................... ATGAGTTCTACTGGAGCGGGCAGGGGTTCTATATCC 1392 36 100.0 36 .................................... GTAGCCTTGATTTCTCGACCAAAGAAACCGCTGTAT 1320 36 100.0 36 .................................... CTCCTGATTTTTTTCTGCTGTCATTTTTTAAATCCT 1248 36 100.0 38 .................................... CGTGGGTGATGGAGAGTAGAGCCTCTTGGCCCTCGGTG 1174 36 100.0 40 .................................... ATCTTTTTTACAGGTAACTTAAAGTGTAAGGCGCGCGGCT 1098 36 100.0 40 .................................... TTCATAACTAACTGCGGGTCAGAAGTCTTGGAAAGCTGTT 1022 36 100.0 40 .................................... GCCTTAATCTCCTACAAAAAATCATTTACACTGTTAATCT 946 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ========================================== ================== 39 36 99.9 38 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : CTTTATCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGCTAGGTAAAGTTTTAATCTATATGATATCTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAAATTTTTGTTTTTGAATACTAGTTATTTGAGCATGAATCAGTTATAATGATATAGCTAGATGGGTTAATTAACGATTAGTATTGAGATTATTTATTGAGTATTAATTAAGGGCTAAAGTGATATTAATGACAGTAAATTCAGTGATTAACGAATGAAATGCGAAGGTCAGCAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : GCATTGTCTTTAGGTAATTATTGCCACGAGCAATAAAAAGCATCTTTCTATTTTTATTGATGCTAGGGAATGGGGAGAAATTTAAAATATGAGAGCGATCGCCTACAATAAGCTATAAGATCGCACCTCCTCAACTCCCCAAACAGCGATTATTCATTTTTATTAAACTGGTACGTCTGACTCCTTCTGCGCTAAAATATCGTTAGTTCAAGGAATTGGCTATGAAAATAAAAGCAATTATTTGGGAAGAAGACGGTGTATGGTGTGGTTCTGTACCAGCTTTACCAGGATGTCATACCTGGGGTGAAAGTTACGAACATTTATTAGAAATGTTGAAAGATGCTGTTCAAGGTTGGTTAGAAGTTGCTAGTCAGCAAGAAGAAGTTGAACCACAAAAACAGTTAATTGAGTTATCTTTATGAAATCCGTTTCTGGTAAGTCTCTGTGTAAGATTGTTGAACGCTATGGATGGAATCTAAAAAGGATTACAGGTAGTCATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 57082-54832 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVE01000135.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 57081 36 100.0 35 .................................... TGATTTGGATGCTCTACTTGACGTAGATCTATATG 57010 36 100.0 38 .................................... GCTTCTGCATCCCCTTCCACCTCTCCCACTCCCCCCAC 56936 36 100.0 35 .................................... TAGTAAATCTGAAACATTTTGGACTTTAGAATCTA 56865 36 100.0 36 .................................... ACGCAATTTTTGGTGGTTGTCTAATATTTTTTCAGG 56793 36 100.0 37 .................................... TTTACTGCTTCAACACGTCTCATTCCAAGACCAGCTA 56720 36 100.0 37 .................................... TCTCTCTGTGTCTACCCCGGCCCCTGGCGCTCTATCT 56647 36 100.0 37 .................................... AATAAAAATAGGGATCAAAACATAGAGGACGTATTTA 56574 36 100.0 41 .................................... AATGCTAACCCCTCGGTTAGCAACTCTGCTATGCAGAGGTT 56497 36 100.0 36 .................................... GTGCAACTGGATTCTGCGAGCAGGAAACTGATAGTG 56425 36 100.0 36 .................................... TGGTTTGGACTGTAACCCCCAATTCCACATTTCTAA 56353 36 100.0 41 .................................... CCACTGTGGGTGGCACGGTTTACGAAAACATCACAAACCCA 56276 36 100.0 35 .................................... GAGGTATTACTAAACCCCCCACACGTCGATGACGT 56205 36 100.0 51 .................................... TGTTTTGATTGTAGGTTTTACACAGGCGAGGATTACCTCGCTTGTGGGGTT 56118 36 100.0 36 .................................... CTTCTTAGTTGGATCAAGACACCTTGGCCATTTTGC 56046 36 100.0 37 .................................... CCGTATTCCCACTTTCTAGAAGACGGGGTGTCTTCAT 55973 36 100.0 38 .................................... AAAAAAACCAGGAGCCAAGAGAAATGAAAACCACCGAA 55899 36 100.0 39 .................................... ATATTAACTATACTCCACCTTTAATATACTCTGTTTAAG 55824 36 100.0 38 .................................... TATCCGACTAGGTTTCAGCTTGTCAGGGTTAAGCGGTT 55750 36 100.0 36 .................................... TGGTTGTTACCGCTATTTTCTTTTAATCCTAGCCCT 55678 36 100.0 35 .................................... GGGCCACTTTCTGAAGATATTCCAAAGTGGCCCCT 55607 36 100.0 41 .................................... CTACACTGCTTTAAACATCGGGAATCTTGCCTGGGCTACAG 55530 36 100.0 37 .................................... ATGCAGCAGCGAAGTACCACGAGGTACTCCACTGCAA 55457 36 100.0 37 .................................... TACTACAACACAATCATTGAAGCCATCGCTCAGGAGA 55384 36 100.0 42 .................................... TTTAAGCGCCATTAAAGTCTCTTCTAGGCAAGGCATAGGATT 55306 36 100.0 37 .................................... GAAACCACCAAGTCTTCTTTCTTCATAACCTTGAACC 55233 36 100.0 37 .................................... ATATCTCCAGCAACTTTTGTGGCATCAGCCTTAAATT 55160 36 100.0 34 .................................... TTTTTGTCTATAATAATTGTACTGGTAATAAAAA 55090 36 100.0 35 .................................... AAGGGGATAAAGGTAGCCGCGCGGCTACCTTAGTA 55019 36 100.0 40 .................................... AACAATTCGCTTATAAGTTCTACAGCCTCAAAAAATGCAA 54943 36 100.0 40 .................................... AATATATTAAATTTAAGAGTTACTAGAGTTGATAGTAGTG 54867 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================== ================== 31 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : ACTACGATCAATGGTGATCGATGAAACTGCTGTTGTCGAGACTCCCGCTAATGTCAGCACTTTGCCAATAATGCTACATTTGGCACTAACTTTCTGCATCAGTGTCAAGCAACTCCAGCATCTCATTTTGGTGCCTTATTAGTATGTTATTCTGCTTCTTGATATTTTCAAGGTGAGCTACTATTCTTTCCAAATCAGTGTCAAGCAACTCCAGCATCTCATTTTGGTGTCTTATTAGTATGTTATTCTGCTTCTTGATATCTTCAAGGTGAGCTACTATTCTTTCCAATATCATCACAATATGATTAATTCTGAACACCCATCTCACTATGGCGACTTGGATTATAAGGACTACTATTACTATTACTATAAAAAAAATGTAAATAACTTCCATATTATTTTGTGTGTAATATTACCAAGATTCAATAGTTTAACATTGTCATTGGTTTATACATGTTTCTATTCAATCAGTGTCCCCAGCGAGTGAGGTCTACTCTATT # Right flank : CCCTCCATTTTAAGCCCTTGCCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTCTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACCCCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAGTTCCTTCGTTAATTACTAGTTTTAGTGTCATTTGTATTACTTTACTTTTTAAATATACTTGGTTAATAAAATTTAAAATAAATCCTGGAATCCCCCTATTATAGAGGATTTATAGAATAATAGTCAATATTGTAGAACCAACAATATAATGTAACATTTAAATTTTCTAATGTCAGTCGTTTATTAGAGATTTTAGAGAACAAATCCAGCCAGGTTCTAGATGAGATGAAAAAACTATCCGAACCACTGTTTTTATTAACACTACTACTGGCGATCGCATGAGATTCAAAATACCCAATAGGCATCAAGTATAAAGTTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 3311-6854 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVE01000015.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 3311 36 100.0 45 .................................... TATAAACCCCATAACTGCAGCCAACTCCCCCGAGGAAGGTTGCAG 3392 36 100.0 38 .................................... TTATCAAGGATGCAGAGAATATCCTTTTGGTCGAGAAG 3466 36 100.0 36 .................................... ACCACAGATAGTTCCTCCTCTTGGGGAGAAGGGGAA 3538 36 100.0 36 .................................... CAGTTTGATAGCGAGTTATAGTGTATCTAATTCTGT 3610 36 100.0 34 .................................... GGGAGATACGGTACTAGATTTCATGTATATAAAG 3680 36 100.0 35 .................................... TGTAATCCCCTATCATGGGGAGTTGTACGTCTTTG 3751 36 100.0 40 .................................... CCACTGCAATTTTGATCCATATGAAGAGGAAGAGAAGGAA 3827 36 100.0 34 .................................... TAACACAAAATGGGCGGAGACTTGGAGCTCTTCG 3897 36 100.0 38 .................................... TAGTCTAATCGGCGAACCCGACTAGGTTTTAACTTGTC 3971 36 100.0 37 .................................... CTAGAGGCAGCAAAAACCGAGGTCAACAACGCAAATC 4044 36 100.0 37 .................................... TGTTCAAAACTAGCTGTGTAGAAACACCCGTAGTCAA 4117 36 100.0 36 .................................... CGCTATTTGGCAAAGGAGTTGGGTGACTCTTTTCTC 4189 36 100.0 36 .................................... GCGAAGTCCGTATTTTGAATAAATAACTTTTAAACC 4261 36 100.0 40 .................................... TAGTTTAAGGAGTTAGCCGCGCGGCTAACTTAATAAACGT 4337 36 100.0 36 .................................... TTGATGAAGTCATTTGTACGCGTTTGAGTACAAATG 4409 36 100.0 36 .................................... ATACCGAAAGGTATGAGGATTGGTAAATCCTATTAA 4481 36 100.0 36 .................................... GACTATTTATCTTTTACTTCATTCTTTTTAGAGGTA 4553 36 100.0 38 .................................... ACGGTATCTGATTTAATAGTATCTTGAGGTAACAGCAG 4627 36 100.0 38 .................................... TTTTACTACGGTAAAGGAACTGCCCGTAGTAAAATATG 4701 36 100.0 39 .................................... GAAAGAGGAAGAGCGGGTGAATGGTTTAAACATGTTGAA 4776 36 100.0 39 .................................... TTTAAAGGAGGTAGTAACTCTTTTAAACAATCTTTGTCT 4851 36 100.0 37 .................................... GTTAAAACCTTTGTTTATCAATAAAGCCCATTACGAA 4924 36 100.0 36 .................................... TGAGCTAGTAGCTCAATCACAAATAACTGAATACTC 4996 36 100.0 37 .................................... TTCCCTTGTGAGTGAGGCAAAAAAAGTATTGGAGGTC 5069 36 100.0 38 .................................... TTCCTCTTCCTCTTCTTCCTCCACCCCTCAAATGGAGC 5143 36 100.0 35 .................................... CTGTAGAGGTTAAACACCCATTAGAGGTGGAGGTC 5214 36 100.0 40 .................................... TCTATTTCCTGTACTTGGTCAATCTATCGTTAATATAGCC 5290 36 100.0 37 .................................... TGCTGAAATCGTGGGAAACCCCCTGTGGTATTGCCTG 5363 36 100.0 35 .................................... CCCCCTTCCAAGGGCCCAAAGCACCCTTTGTCACG 5434 36 100.0 35 .................................... AATTGTATAAAAAACATTCCAAAAAATAAATAATA 5505 36 100.0 41 .................................... TAGCAGACTTAAAGAGAGCTGCTAAAGAAATGAAGGAAAAC 5582 36 100.0 34 .................................... TTAAACTGCAAAACAAAAGTCAGGGAACTCTCTG 5652 36 100.0 38 .................................... CCAATCTGGGAAGTAGTCAACTACTTCCTGGTAGGTTG 5726 36 100.0 35 .................................... AACTTCTCCCTTGAACAAGGAGAGTTGGGGGTTAC 5797 36 100.0 37 .................................... ATCTCTGGTACTAATATTTAAATAATTTTTTTTTAAC 5870 36 100.0 35 .................................... ATAAACCCCCCGCACGTAGATGCGGAACAGATCGG 5941 36 100.0 37 .................................... CGAACCACCCCAATCTTGGGTTCAAAGAAACCAGCCA 6014 36 100.0 34 .................................... TTAAAGAATTAATCTCTTACATCGTAAGATTCGA 6084 36 100.0 38 .................................... TTCAAAAGCGCATACATCAATCTCTCCCTGCTGGTCTG 6158 36 100.0 39 .................................... TCAGCCATAAATGGAAGGAACCTACTCGAACTGATTTAC 6233 36 100.0 38 .................................... TGGATCCAGTCACGGCTACTTCCTCTCCGGAGGAAGGC 6307 36 100.0 36 .................................... ACAATTAACAGAAAAGCATAAAAGATCAGCCAGAAG 6379 36 100.0 37 .................................... CGTCTGCGAAATTGGCGGGCGTAGAGATTATGGCCTT 6452 36 100.0 38 .................................... TCGAATAATTCTGAAGCCATCAGAGGGTGGCTTTGGTT 6526 36 100.0 38 .................................... AACTTGATAAAGAACTACGTCACGAAGAAAACTCTCAC 6600 36 100.0 39 .................................... TTTCTTTGGTAAACTTTTTACCACCTAACGTAAAGACAA 6675 36 100.0 36 .................................... TAGGGTGATTTCTTGTTGCTCCGCTTCATCCCATAA 6747 36 100.0 36 .................................... AATAAAAAACCCGCTCTAGTGGCGGGTTCTGGAGAG 6819 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 49 36 100.0 37 GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : AATGTTAAGATTTTGAGGATTGTGTCCAAGTTGTGCATTGGTATTGGTGATACCAAATTTGATCAATTAATGACTCTATTCTCAATAGACAATGGATTTTAACTGGGTAAAACGCAAAGATTGTAAAGTTTTATTGCAGGATTCAACACTTGTGGGTTTAATCTTTATTACCGATATATTAACCTTTGCTTTTATTAATCTTTTTTCTAGGTTATTCAAACTTCATTATAAAAGTTAGAAATAAACTAAGGCAACTTTATAAGCAGTCAGATTTTTATAAATGTTACCTTAATTTAAATATTAAGAAATAACGGTAGGAAAAACATTTTAATTACTCGTGAAATTCTACAAGCTGCTGTTAATAAAGCATTTAGTGTAGGTAAATTTTACTTTACAAATATGTGGACAGAATTTACAAGCAAAAATCCAGAATAAAAAGCAATTGGTCAAGAAATATTATTACAAGTTGCCAAAATAGATAATTTTATTATAACAGGTAC # Right flank : CCCCTCCATTTTAACACCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTGCTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCTATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2725-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVE01000017.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 2724 36 100.0 37 .................................... CAACGGTAAAAGAGTTGTTTGCGATAGTAGATGGTTT 2651 36 100.0 36 .................................... CTTCTTTAATATCTCTCCAAGAAAATATTAAATATG 2579 36 100.0 38 .................................... AACTCTGTGTATTGGACATGTTACTACGAGAAGGTATT 2505 36 100.0 37 .................................... CCATAAAGGGGCTTTTAAAATTAATTAATTTTGCAGA 2432 36 100.0 40 .................................... ACATAGCGCCTCTTGAAGCGCTAGGAATATTTCCTCGATT 2356 36 100.0 39 .................................... AAGAAGAAACGAAGGACCAGAAGATAAACTTCGATTAGC 2281 36 100.0 38 .................................... CGAAGGGGAATGGACACATAACTTGCTCCCCACTTTTG 2207 36 100.0 37 .................................... GACAATACAGGTTTCTTCTATAGACAATATAGAAGAA 2134 36 100.0 40 .................................... ACGCGGGCTTTGTAGACATGGAAAAACGTGCCATATCGGC 2058 36 100.0 43 .................................... CACCCGTCGACTGGAACCCAGCCGATCTGTTCCGCATCAACGT 1979 36 100.0 37 .................................... CCCTTAATTCTATAGGTATCCCTCTGCCTACCTTTTC 1906 36 100.0 41 .................................... CTCTAGGCTTTAACAAAGACGGAGTTTTAGCTATTTTGCAA 1829 36 100.0 42 .................................... CTCCTCACGAAGCGCCAGGGACTGCACGTACAGTCGGGGGGT 1751 36 100.0 35 .................................... TTCAACATCGTGGTTTCTCCTTGCTCTATGCTTGA 1680 36 100.0 37 .................................... ACCTTTTTGAGTACGGTGTGATAGTTGTTATTGTACA 1607 36 100.0 41 .................................... AATCCACGCTTGAGGTGGATGGTACTCCGCACCAGTAACCT 1530 36 100.0 38 .................................... ACCAGGATGTTTCCAGGGGACATGATTGCTGCAATAGC 1456 36 100.0 39 .................................... CTAAGGTTAACACAAGGTACTTATCTCCAGATCTCCTAA 1381 36 100.0 36 .................................... ATATAATAGTTTGTTAGGATGCGCTGTGGTAGGTAA 1309 36 100.0 45 .................................... TTGCATGACTTCTATCATGGTTTTTCCTCCTGTTTATTGATTGTT 1228 36 100.0 39 .................................... AGCTTTATTTCTCCTCGCTCGTTTTCCTTATTCCTATAA 1153 36 100.0 31 .................................... GTAAGGCAGGGTAAGGCAGGGGGTAAGGCAG 1086 36 100.0 39 .................................... TCACAAGCCGCACTGGCGTGCGCCTGCGCAATGATGGAG 1011 36 100.0 37 .................................... ATCCAGCTTACCGCGATCGCTGTTAATGCGATCGCGA 938 36 100.0 37 .................................... CCGTCGACCGGCACCCAGCCGATCTGCACGTCATCGA 865 36 100.0 37 .................................... TAACCAATAGTAGGAATAACAAATGTATTACAAATCC 792 36 100.0 33 .................................... TTCGTATGATAAAGATTTAAGTTTAACTTTCTT 723 36 100.0 34 .................................... ATGGGGACCCAGCCGATCTGGATGTCATCAACGT 653 36 100.0 39 .................................... GTATACAAATTCACATTCTGCTTCACAGAATGTAGAACA 578 36 100.0 35 .................................... AAAGATTAAAAGGAGAAACAAAGAGCATAATTTGT 507 36 100.0 36 .................................... TTTTATTGAATTCGTAGGGCAGGGGTTGAGCCTTGC 435 36 100.0 35 .................................... TGGTGTTCGCAGGTTGTCTATTACTATGAGTCCCC 364 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================================= ================== 33 36 99.9 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : AAAGCCATTACTCCAAGAATTTTAGCGTATACTGTTTGATTGGATGTAGCTATGTAAGTTAGTATTGTATTTTAAGATATTAAATTATAGCTATACATTTTTATCCAGACAATGAAATATACTTTTAAAGTTTTGCACCCAGTAACTTACAGTAGCGTATTCACAATAAAAATAAAATATACATAATTTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGGGGGAATATAGGGGAAAATCGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAAGGTTTCAGCCATTATTTTGATGGTGCTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : ATTGAGTATAAGTAGTGTAGATAAGTAAATTCGCAAACTTTAACTTTCATAAGAGAACTAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGTCGGGCATGTAGATATTTAGTTGTAGTAGCAACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCACCATTGTGTAAAGCTAAGGTAGCATGAGTGTGGCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTGAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 202183-203877 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVE01000048.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 202183 37 100.0 39 ..................................... GTGGATTATTAAATTCATTGAAATCAAGAGATTGATTAG 202259 37 100.0 39 ..................................... CCGCATTCTTTCCTCCTCTTTCTTGCGTCTTCTTTCCGC 202335 37 100.0 40 ..................................... TTGGTAAAATAATTGGTTTTGCTGAGCTTACAGATTGTTC 202412 37 100.0 34 ..................................... TCTGTTCCTTCTTATTTGGTCGATGATGTTAAAA 202483 37 100.0 39 ..................................... GATATACGACTCCTTTTGCTGACCAACCACTACAATCCA 202559 37 100.0 36 ..................................... ACTCTTCTAATACAGGTCTCAAGGTCGTTTCCACAA 202632 37 100.0 38 ..................................... TTAACTTTTAATGGGTGGGCGACCACTCTTTCCATTGT 202707 37 100.0 37 ..................................... CGAGCTGGGCTTTATTCATCTTTTTGTGGCTGGTCTC 202781 37 100.0 35 ..................................... CAGATCTCCGCATCACTTGTATGAACAGAGAATGT 202853 37 100.0 42 ..................................... ACGTTCAGGTTATTTCATCTACATATAGTTATTTAAGTATCT 202932 37 100.0 36 ..................................... CCTTGCGTTTACCTGGAAAAATTGTTTCCATATTTA 203005 37 100.0 34 ..................................... GGTGTAAAACCAATGTCTGAGTCTGCTCCCGTTG 203076 37 100.0 38 ..................................... TAAACCCCAGGAAATAATGGATATTAAAACCGGTAGAA 203151 37 100.0 37 ..................................... TAAGTTGAGAAGGGGGTCTCTCTAGTTGAAGCTCAGT 203225 37 100.0 40 ..................................... CGGTTCCGGTAAACCTGTTAGTGCATTAATTGATATAATC 203302 37 100.0 36 ..................................... GTGTCCCTTCCGAGCTAGGAGACCCCGTATAAAGCA 203375 37 97.3 38 ............................A........ AAGAGGAGTACGTGTTTTTCCTGGATCCATACAATAGC 203450 37 100.0 39 ..................................... TTTCCCATCCAAAGAGCCTGGATCTCGAAATACGACCGG 203526 37 100.0 38 ..................................... CTAGTCCGGGAAAACCAAGGATTTTGATTATCTGGTGC 203601 37 100.0 41 ..................................... AAAACGCCGTGGCACAAAACTAGAGGGTAATCTAGGAACAG 203679 37 100.0 47 ..................................... TGGTTGTCCAAAGGTAATTAAAGTCAATTCTATATCAGGATAAACTG 203763 37 100.0 41 ..................................... TCAGCTCCAGCAGCTTTATCTATAGCTTTAGATATATCAGT 203841 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 23 37 99.9 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGTTTGCTGTATGGTGGTTTGACTCGTTTTTCCCTGTACTTTCGTTCTACTCTTTTATGGTATATTCTATGTTAGCTCAATTCGCCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGTTTGGGCGATCGCC # Right flank : CCACATTCCGCACCCTAAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //