Array 1 2506712-2507093 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR698953.1 Bifidobacterium longum isolate MGYG-HGUT-01292 chromosome 1		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence            	Spacer_Sequence                                                                                                                           	Insertion/Deletion
==========	======	======	======	===========================	==========================================================================================================================================	==================
   2506712	    26	  81.5	   138	C....G...-...........G..C..	AGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCAGTGGCATAGCGCGGGTTGCGGTCCGAGCCACGGCCACGGCCGCCACGGAAACCGCCACGGCGGTCATCACGATCGCCACGGTCATCACGATC	G,C [2506714,2506716]
   2506878	    27	 100.0	    54	...........................	ATCATCACGGGAGTCGCGAGCATCACGGTCATCACGATCATCGAAGTCACGGTC                                                                                    	
   2506959	    27	 100.0	    33	...........................	ATCATCGCGATCATCGCGATCGAAGTCACGGTC                                                                                                         	
   2507019	    27	  81.5	    21	AT.G..G.................G..	GTCGTAATCATCCTCGAAGTC                                                                                                                     	
   2507067	    27	  81.5	     0	AT.G..G.................G..	|                                                                                                                                         	
==========	======	======	======	===========================	==========================================================================================================================================	==================
         5	    27	  88.9	    62	GGCAGAACGACGGCGACGCGGACGATC	                                                                                                                                          	       

# Left flank :   CGGCTGGCCATGACTCGGACATGGCGCGGCACGGCAAGCGGATTTTGCTGTTGGGCATAACAACAGACGAGAGAATAGATCCGGTCGTGAGCAACAGGATAGGTGCCATGCGGTGCCGTGTACAAACTGTTGTCAGTTGTCAACGCTTTTTAGCGTGGCTCCAATCATCTTAATGGCTGTTTTCCGCCATTCTTGATGCATGAGAATAGTTGTCAACTGACAACTGAATGTACATGGCAGCAGCACGAGTGCCCTATTCAACATCGAAATATGTAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATTAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCGGTGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCAAAGT
# Right flank :  CGTCACGATCGTCGAAGTCACGGTCATCGCGATCGGAGCGACGGCCACGGCCGCCACGGCGATCGTCACGATCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGTCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGGATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCCTGAGCACGTCTTCGACGGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCGATTTCAGCGCCGGTATCTTCC

# Questionable array : NO	 Score: 4.54
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.65, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GGCAGAACGACGGCGACGCGGACGATC
# Alternate repeat :   GAGCGACGGCGACGCGGACGGTC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,1] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.80,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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