Array 1 182016-182643 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXAM01000010.1 Pseudomonas aeruginosa strain HCF55 IPC1407_10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 182016 28 100.0 32 ............................ AACCTGCTGACACGCCTGGGCGAGGACTTCGA 182076 28 100.0 32 ............................ AATATTCGAGCCGCCATCCTGCATCTCGAAGC 182136 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 182196 28 100.0 32 ............................ ACCGGCAGGACGTGATCGAGGTCGGCGTGCTC 182256 28 100.0 32 ............................ AGATCGTGATGCCTCCTGCATGCGAGAAGGGC 182316 28 100.0 32 ............................ TGATACGCAGCTCAGGACGCAGGCCAAAAACA 182376 28 100.0 32 ............................ TTGGGAAGTACTCAAGGATCTACGCCGCACTG 182436 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 182496 28 100.0 32 ............................ GTCGAGCAGTTGATAGAGGAAATGCGCCGACA 182556 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 182616 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGTGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 192642-191168 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXAM01000010.1 Pseudomonas aeruginosa strain HCF55 IPC1407_10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 192641 28 100.0 32 ............................ TGTTTCCGAAGTGCAAACGGAACTTTGGCGAA 192581 28 100.0 32 ............................ TTCACGCGGGCGTTCGCTTCGTCCAGCTCGGC 192521 28 100.0 32 ............................ ATCGGCTGGTCGCTGATCCCGCTGGGTTGGAA 192461 28 100.0 32 ............................ AAATCACGCCGCCCGAATGCCACTTCGGACTC 192401 28 100.0 32 ............................ TCAACTGGGGAATGTCTACTTGCGAAGACTGC 192341 28 100.0 32 ............................ TGCTCCGGAAGGTACTGAAGCGCCCAGGTCGG 192281 28 100.0 32 ............................ AGCATTCGCAGCCCTGCAATGGGGCTGCTCGT 192221 28 100.0 32 ............................ TTAAGCCTCAATCGAAGTTCCACCCGGCTTGT 192161 28 100.0 32 ............................ AGGTGCTGGCGTCGATTGTCAGCGCGGTCAGA 192101 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 192041 28 100.0 32 ............................ CTCGACGGGGCTTGGCGCACCGGCGCCACTCC 191981 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 191921 28 100.0 32 ............................ ACCGTGATTGTGCCCATGCGGCGCATGTGCAT 191861 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 191801 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 191741 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 191681 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 191621 28 100.0 32 ............................ AGCAATGCGATCCGAGGACTCCAGAACGGTAT 191561 28 100.0 32 ............................ AACTCCCGCGCCAAGGGCGCCCGCGTAGAACT 191501 28 100.0 32 ............................ GATACAACCTGGCGATGGGGAACCAGGTGGAT 191441 28 100.0 32 ............................ ATGGTGACGCTGCACGACGGCCGCCAGGTGGC 191381 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 191321 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 191261 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [191237] 191195 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 525965-524670 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXAM01000004.1 Pseudomonas aeruginosa strain HCF55 IPC1407_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 525964 30 100.0 37 .............................. GGCTACTACGCCCCAGGCGAAAGCCGATTCGCCATGT 525897 30 100.0 38 .............................. CATCAGAATCATCGTGAAGCGCTTGGCGCCTACGATGT 525829 30 100.0 35 .............................. ATTTCAGTCGCCTCTGAAGTGGGAGCCGCCGGCGT 525764 30 100.0 37 .............................. TTCCGGGATCAGGGCGGCCTGACCCAGGACTGGGGGT 525697 30 100.0 37 .............................. AACCAGGCGTTTGGTCTGGTCACGCAGGGTAACGAGT 525630 30 100.0 36 .............................. ACAGGCCTTGCATTCGCTGCAATGGCCGTCCTTCGT 525564 30 100.0 37 .............................. CGCACTGAGCAGGCCAACCAGCGCGCTGAGCGTAAGT 525497 30 100.0 38 .............................. TCCACGCCGAGGAACCCAACGAATCCGCCCGCGAAGGT 525429 30 100.0 37 .............................. AACAACGGTACCGCGTCGCCGATCAATGTGAAGATGT 525362 30 96.7 36 ..................A........... ATGAACGGGACTCCTGTAGCTGTTGTATGGCCTCGT 525296 30 100.0 37 .............................. TTCGATAGCACCTATTCAGCTGTAGACGTTGAGAAGT 525229 30 100.0 38 .............................. GCCAAGCTGTGCTTCGAACACCTGGGTATCAAAGTCGT 525161 30 100.0 36 .............................. ACTGAACAGGAGAACGCCAACATGGCACCGAAGAGT 525095 30 100.0 35 .............................. ACATGCGCCAGCACAGCACCGACCGATTGAGGTGT 525030 30 100.0 36 .............................. TACAGCGATCGTGGCCAGCTGCTGGACGAGTCCAGT 524964 30 100.0 36 .............................. GGCGCAAAATGGACGGCTGTGCGTGTCGGGAAACGT 524898 30 96.7 35 ...C.......................... CCTACCGATGAGGTCACCCTCGAACGCGCTCTGGT 524833 30 100.0 39 .............................. GGCATGACGCGAGACGTAGCGCTCGCCATGGCCAAAAGT 524764 30 100.0 35 .............................. CGCATCAACGGCAGCGCGTACCCAACGAAGGTCGT 524699 30 90.0 0 .......................GC....G | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.2 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATCTATATACTCTTTCTTTGAAGTTAGGAGCTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ACAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAACAACTCTTGTGTCACGGTGTCACGGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //