Array 1 74100-72529 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTUW01000023.1 Photorhabdus heterorhabditis strain ETL contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 74099 28 100.0 31 ............................ AGTGCGGTTAAGTAATCAAATTGCTGATGCG 74040 28 100.0 32 ............................ CTGACTAACGCAGGGCGGTTAAGCCCGTTGTA 73980 28 100.0 32 ............................ ATTACAACGCCGCCCGCAATCGCACAATAACC 73920 28 100.0 34 ............................ CCCAAACCACTAAATATCGCAGTCTGCCATATGA 73858 28 100.0 13 ............................ CTTTGAAATTGCC Deletion [73818] 73817 28 100.0 32 ............................ CGGTCTTGTTGAATTGAGACATCAAACGGCCA 73757 28 100.0 32 ............................ TGCAAAAGAGCCATTAGCATTCATTTTGCGAT 73697 28 100.0 32 ............................ TCAGCTCTGTTAACAGGCGCTTCAATACGATG 73637 28 100.0 32 ............................ ACAACACAATGACGTGGACACTGAAATCAACC 73577 28 100.0 32 ............................ GCATTTATCAGTGCTCACACACTCCATCTTAC 73517 28 100.0 32 ............................ GTTCTCTGATACTGACGCGGTAACAGTGGATG 73457 28 100.0 32 ............................ AATTTCCGGCGTGAATATGGCGATCATGCTCA 73397 28 100.0 32 ............................ AACAGCGGTCGTTTCCGCTATCAATTGCATCT 73337 28 100.0 32 ............................ TTCGCTATACATTGCATCTTGTACGTGATAGC 73277 28 100.0 32 ............................ TTTTCGCTGTGTGCCTTTGATGTGATTAATAT 73217 28 100.0 32 ............................ TGCCGATCATCATGATTATTGATGGAATGTGA 73157 28 100.0 32 ............................ GTTTCTGAATCAGCATTTGGGTTAACAGGCCA 73097 28 100.0 32 ............................ TCCAGTGAGGCTTTGATGTCATATTCGATCAT 73037 28 100.0 33 ............................ ACTGACAAGCTGTACGAGTTTCTAATTTCTTAC 72976 28 100.0 32 ............................ ACGCGACCCAATTGTTGCAATGGACAGGATAT 72916 28 100.0 32 ............................ ACTCGGGGCGTTGAATCACTTCGAAGCCTAAA 72856 28 100.0 32 ............................ AGCAAAACTGAATATAAAAGGTAAGAGTAATA 72796 28 100.0 32 ............................ GTTATGGGACGCACACGTGCAGCTTACTTGAA 72736 28 100.0 32 ............................ TGATGCCACCCTAAGTAACCTGCTCCGAATAG 72676 28 100.0 32 ............................ TGGCTCCCCGTCCTGCCGAACAGCGCGTTACA 72616 28 100.0 32 ............................ AGATTTAACCCCGCTGGTCGTGAAGCGGCTAT 72556 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================== ================== 27 28 99.9 31 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTTGGGATACTCTCTTGGTGAAAAATGGCAGGGAAAAGGGCTGATGTATGAAGCTTTACAGCCAGCTATTCGTTATATGCAACGTCAACAGGGGATACATCGGATTATGGCTAATTATATGCCAAATAATCATCGTAGTGGAAAATTGTTGGAACGATTAGGCTTTGAACGAGAAGGTTATGCCAGGAAATACCTGATGATCAATGGAGTCTGGCAAGATCATGTATTAACGGCATTGACGGATGAAAAATGGAGTGAAAAAAGTTGATGCTTAAGCTGTATTGCCACCAGATAAAGTGAAGCGGATTAGTAATGATGAATTAAATTACTGTTGAAAATCTGCCAGGTTCCCCGCACCTTATTTTTGACCCTTTTTTAAGAGGCGATTTTAATTTATTGATTTTCAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATACTTTAACTGTCAGTAAGTTAAGGTTAATATGCAACA # Right flank : AGTTAATGATTTATAGCGTAATGAGCTCTAGTGCATAAGCATGTGTTTATGTATACTCGCCGCGCTTATTAATAAAGTGGATGATTAGTCATGAATAATATTACCGCCTTGTCTTTGGCTGCTGTAATGTTTACTAGCGGTTGCGCTACGATTGTGGGGGATAAAACTCAGCATATTCAGGTTGATAGTAATCCATCAGGAGCCACATTCTCCATCAAAGATGAGTTAGGCAGGGTTGTTGCACAAGGGAAAACGCCTCAAGATGTGATTTTAGAGAAGTCCGACGGGAGTTATTTTGGTAAGAAAGGCTATCTGGTCTCTTTTACTAAAGAGAATTCTGAGTCTGTAACGTTACCAATTAAAGCGAGCGCTAATGGTTGGTATATTGGTGGTAATTTTATATTCGGTAGTTTAATTGGTTGGCTCTTATGTGATCCGTTTAATGGCGGGATGTATACGCTGCATCCAAAGGCAGTGATCGCTGAGCTACCTCAGACTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63113-62306 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTUW01000016.1 Photorhabdus heterorhabditis strain ETL contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63112 28 100.0 32 ............................ GTTTGCTTGAACTAGACCGGACCCTCAGAAAT 63052 28 100.0 32 ............................ ATTTAACGTTTTGCGTATGCCCTTGATAGAGC 62992 28 100.0 32 ............................ AATCATTGCTGTTATTAAAGCGATCCCCGCTA 62932 28 100.0 31 ............................ CCCCAATAAAGTATACCTAAATAATCACTCC 62873 28 100.0 32 ............................ ATGATAAGCCGGAATTTGATGGCAGTTATCTT 62813 28 100.0 32 ............................ AACAGCCGGGGTTTTTTCTTTTACGTGTTCAA 62753 28 100.0 32 ............................ TGCATCAAACCCATAGGGGCGTAAATGAGAGT 62693 28 100.0 32 ............................ GGAAAGCAGTTTTGCCGCCAGTGCCAGCCCTG 62633 28 100.0 32 ............................ TTTGCCGTGAAAGACACTGGCCCGGCCCGTGG 62573 28 100.0 32 ............................ TGGGGTGGCTCAGTGCGTCGAATACATTTACG 62513 28 100.0 32 ............................ TGACATTCAAAAAGCCTGATACTGATTACGAC 62453 28 100.0 32 ............................ TACAGAAGAGAATGGATCATGCTTATATCGGC 62393 28 100.0 32 ............................ ACCTTGAGTTCTCACTCTCAAAGGTGGTAACC 62333 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTAAATGATTACCAACAAGAAAAGCAGTTTCGGAGAGATTGACTTCCATGGCAATAGATAATAGTGCCTCATTTGAAAGCCAATTATCCAATATAACAACAGCGGCTGGATTGCCGGAAAATAGGTGATCTGTGAATGCATCAACATGATAGATGGGTAGTGAGGTCATTTAATTCTCTCTTAAAATAGAATTATCTATAGGGTCATGAAAAGGGATCAATGTTTTTAATTTTTATTCAAAAATTACCCGCTATTTTATACAACTATATGTAATTGGAAAGAGAGTAAGCTGCACAGTTTTAAAATATTTAGTTGGTTTACCGAAACATTGGGTATCATTGTGTTAACCAGATATGGGACCCTATTTTGACCCTTTTTTTGTGGTTTGTTATAACTTGTTGATTTATCTATAATATTATTTGGTGCTTATAAAAAGGGTTTTTCTGCTTTTTGTCATTATGTTCTTTAATAATCAGTAAATTAAAGTTAGTATCTAACA # Right flank : TCGATTGAATGCGCTAAATGCTTCCGTCTAAATATGCATCATTTCTTGTGCTTCTGAGCATATTCTTCACTATTAACCCATTGATGATCCTTTTCCCAAGTAAATAACCAATTACGGGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTCGTAACCGGCAATGGTTGCTACCGGATGATAGCCTTTGGGAACCATGACCACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCGTCGGTATAGATGCGTTGTATACAGAATCCCTGAGGTGGGTTTAAACGATGATAATAGGTTTCTTCCAGATAGGTTTCCTGTGGTTGATTATCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTACAACCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCCGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGCTGGTTATAGCCATTTCCACGTTGTTCTGCATCAATATCCTGTGGTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75545-74197 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTUW01000016.1 Photorhabdus heterorhabditis strain ETL contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75544 28 100.0 32 ............................ CCTAAGATACGGCAAACAATTGAAAATTCATT 75484 28 100.0 32 ............................ TCTGGCAAGATCATGTATTAACGGCATTGACG 75424 28 100.0 32 ............................ TACTAGATTAGTCCTAAGACCCTCTGATAGAA 75364 28 100.0 32 ............................ CTCCGCCGTCTGGACTTGTGTCGCGGGTGTGG 75304 28 100.0 32 ............................ ATTCATTTATCTCAAAATCACTGATTGTCCTT 75244 28 100.0 32 ............................ GGCAATAAGCAACGCATAGCATTAATTGCTTT 75184 28 100.0 32 ............................ TCATTTACATTTTAATGGTATAGGGGTTTCTT 75124 28 100.0 32 ............................ TCGAACTTGATAATTCACATTGACTTTCCCAC 75064 28 100.0 32 ............................ AAATCATTAGCACATTGTTCCCATGCAGTATC 75004 28 100.0 32 ............................ CTGGTTAGAAAATGGCTATGATGCTCTTTTGA 74944 28 100.0 32 ............................ GGCAGGACCCGCAACAAGAGCTGCAACATTTC 74884 28 100.0 32 ............................ ATGCAGTATCTTTAGCAAAGAATTCAGCCCAC 74824 28 100.0 32 ............................ TCAGACCGATACCATGTTCCTGACACTTTTTG 74764 28 100.0 32 ............................ ATCGAGGGCATGGGATTAGTATCATCATCACC 74704 28 100.0 32 ............................ TTGGGCTTGAGTAGTCCTATTAACTTTATCTA 74644 28 96.4 32 .........................G.. GGTTTTTGAATCTTTCGGCTTTAAGCATGGTA 74584 28 100.0 32 ............................ GACGATTGCGGTATCGGAGAAGTTGATACTAT 74524 28 100.0 32 ............................ TGAATACTCAACAGATTGGAGTGAGTGCGGTA 74464 28 100.0 32 ............................ TCCTTGTGTATCCATTAATCGCGTGAACTTAT 74404 28 100.0 32 ............................ ATAGCGCTCGCAAGATTAACAACCGCATAAAA 74344 28 100.0 32 ............................ GTTACAGTACACAAGGAAGAACTGCATCAAAT 74284 28 100.0 32 ............................ AGTTGTGGCTCGTTTGAATAATGACGGTGATA 74224 28 89.3 0 ......................G...GT | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAATGTAAAAAATGTGGGATAGTAAAAATCGTAATAAATTATTTAAAGGAATTCGAGTTTTATTTGTAGGGCAATAATATTACATCCATTACTTTCATCCAGAGTTATTTAATTCTATTTTTATATGGTAATTATACAAGAAGAGAATGAAATATGATGTATTCAGTTAAAAGTGGCTAATATCATACGTTGGTAAATATACTTAAAAATATTAGGTCAGCATATTCTAAATAGAGTGAGAATAAAATTTATCTTATTTGATGGTTCTATCATGGCTGAACGTTTTGCGATCAATTCTTTCACTTACTGCATAGACATTAGAACGGGCGATTTAAGTGAGTGATGGTATTTTTACTAAACCCTATTTTTACTCTTTTTTTGAGGTGAATTATAACTAATTGATTTTATAGTAAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAACAGTTATGCTCTTTGAAAATTAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAATCACTCTCGTTCGGTAAAAGCCTTATATTGTAGGTTGGTAAAGAATTGTAAATTATTATGATTTGCATGTGCGATATTTTACCTTGTATAAAATTTATGCATAATGTTTTCCATAAGTTAAATTAACTATTCAGGTAATTCTTAATTATGGATAACAGCTTTTCTCCAAGTGACCTCAAAACGATTTTGCATTCCAAACGCTCTAATATTTATTACCTGCAATATTGCAGAATATTAGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAAACAATCACTATATTGGAATATTCCAATTGCAAATACCACGGTAATTATGTTGGGAACGGGGACTTCTATTACTCAGGCGGCAATGCGTGAATTTGCTAAGGCAGGGGTTTTGGTCGGTTTTTGTGGTGGTGGAGGTTCACCACTGTTTGCGGCTAATGAGGTTGAAGTTGATGTATCTTGGCTGACACCACAAAGTGAATATCGTCCTACTGAATATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 90280-88993 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTUW01000016.1 Photorhabdus heterorhabditis strain ETL contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 90279 28 100.0 32 ............................ ATTTCACGCCAGAGTTTTCTCGCTGCTGACTC 90219 28 100.0 32 ............................ AATGACAATGAAAATGTTAACAAACATGCTAG 90159 28 100.0 32 ............................ AAGATGTAGCTTGAATAGTATTAACTGACTCA 90099 28 100.0 32 ............................ CTGAGGTCTGTGATTGATATCTGTCTACCCTC 90039 28 100.0 32 ............................ CGAAGCGCACGAATATCGGGATGATTCGCAAG 89979 28 100.0 32 ............................ TGTTGATGAAAAAGGTATGCAAGACTTGTACA 89919 28 100.0 32 ............................ GAAAAAGTCCGTTCCCAGATAGCCGATAATGA 89859 28 100.0 32 ............................ AAAAAACTAAAAGCAGAATTCCGGGTCATTAA 89799 28 100.0 32 ............................ AACGGGTGGAAAAGTTAATCTAGATAACGTAG 89739 28 100.0 32 ............................ CAAAGTGAATTTTGTGATCAAGTCTTCATAGA 89679 28 100.0 32 ............................ TTTGTGGGCGTGAATTCATGAACTCGTTGTCA 89619 28 100.0 32 ............................ GTCACTCAGTGGAAAGCTCGTGGCTGGCTGGT 89559 28 100.0 32 ............................ TTTCAGCGGAGTAAACACCGGTTCATGTTTAT 89499 28 100.0 32 ............................ GCAATGACGCTGGTTCCTTTTGCCTGTCCATG 89439 28 100.0 31 ............................ AAAAACGGGGCATTTGAAATGCGAAGCGCAT 89380 28 100.0 32 ............................ TTTGCGCATTGATTTTGTCGCGGCAAATTTAC 89320 28 100.0 32 ............................ TCTATGACTTCATAACCCAAAAATGTATGTTT 89260 28 100.0 32 ............................ AGTCAGAAATTGAACTACCAAAACAAGAATTC 89200 28 100.0 32 ............................ TAAATATCGCAGCGTTGCGTATCTTTCAGGTC 89140 28 100.0 32 ............................ CCGAGGAGCAACGCTAATCCGGTAACTAAGTT 89080 28 100.0 32 ............................ CCGAGGAGCAACGCTAATCCGGTAACTAAGTT 89020 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTAAAGATCAATCCCCTATTAATATTTAT # Right flank : ATGGTGAAACACGACGAATATTAGAGATGGAAATCCGTAAGACATTATGGATATGCATCATATTTTTGTGGCAATGGCAACATCTATTACTGAAGTTGGTAGGGATCATGATTATGATTGGAACATTGCTGAACTGGGTTCAACGCGCTCGTTGATACAACTTGTCGAATGTATTTAAAGCAATAGGCAAAAAGAGGCACAGATGCTTAGGTGGTACAAGTAGTTTAAAAACACAATAAAGGTTAGTTAATTGCGTAGTCGTGGAGCCAGTAACTGATTGCGGATGGATTCTGCTAGCTCGTCCAGAGAAGGTTGTTCTGGATGGTCATCTGATGTTTCGTAGGCTAATTGCGCTTCGGCTAAATAAGTATGTACGGGTTGGCCGTCGTCATCTTCCATCACAACATGATACCAAGGAGCAGAACGCAAAGCAGCATTGGATGCAATGTCATCCTCTTGAGGTTGTTCCAGAGAATATTCCACATCAATGTCTACGATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 688-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTUW01000032.1 Photorhabdus heterorhabditis strain ETL contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 687 28 100.0 32 ............................ TAAACCGAAATTCCCTTTAGTTTTGCATTCGT 627 28 100.0 32 ............................ ATTATTAGAAAAACCCGCTCTTGAAACCATGC 567 28 100.0 32 ............................ ATTATTAGAAAAACCCGCTCTTGAAACCATGC 507 28 100.0 32 ............................ CACACTTGTTGATATTACAGGAACGCCACGTT 447 28 100.0 32 ............................ AAAGACGGAACAACATTAGGTGAATGGTTTAT 387 28 100.0 31 ............................ CCGACTTTGATACGTGGGATGGGAAGGATTG 328 28 100.0 31 ............................ CCGACTTTGATACGTGGGATGGGAAGGATTG 269 28 100.0 32 ............................ TAGATTAGGTAATTTAAATGCAACAAAAAATT 209 28 100.0 32 ............................ AGTGATTAAAAACCGGCTCGTCAGTGGCGGAA 149 28 100.0 32 ............................ AACAGTTGACTGAAATAATTCAAGTCTCTGTC 89 28 100.0 32 ............................ AAAATCGATCACTGTTGCCGGAAAACCCTCAC 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTAATGTCTAAGTTGCCCAAACTTAAGAGGTTGGGTGGGAAACATCACTAGGTTCCAAGTATATATGACTTATTCCTGACAAATATTTACAGGGTCCCGGAATCATCCGTCTCTGGATATCTTATATACCCAATAGATTTCAAGATGCATCGCGACGGCAAGGGAGCGAATCCCCGGGAGCATAGAGAACTATGTGACCGGGGTGAGTGAGTGCAGCCAACAAAGAAGCAACTTGAAAGATAACAGGTATAAACTCCATTTTTCACATTATATTACAATATATTAAGGAAAATTTAGCTATTTCTGCGACAGCTAAAAGCTACCAAATATTGCTATAAGATATGGTGTTTCTACTGCACCCTAATTTTGACCCTTTTTTATCGCCAAATAATAACCTATTGATTTTTAATTAAAATAAAGTATCTCTTATAAAAAGGGTTTTTTCACTTTTTATGATTATACTCTTTAACAGTCAATGGATTAGAGTTAATATGCAACA # Right flank : AT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //