Array 1 32421-30314 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQZ01000029.1 Salmonella enterica subsp. enterica serovar Braenderup strain 93 NODE_29_length_55161_cov_11.8087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32420 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 32359 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 32298 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 32237 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 32175 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 32114 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 32053 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 31992 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 31931 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 31870 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 31809 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 31748 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 31687 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 31626 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 31565 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 31504 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 31442 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 31381 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 31319 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 31258 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 31197 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 31136 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 31075 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 31014 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 30953 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 30892 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 30831 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 30770 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 30709 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 30648 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 30587 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 30526 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 30465 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 30404 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 30343 29 89.7 0 A...........TC............... | A [30316] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49744-48679 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQZ01000029.1 Salmonella enterica subsp. enterica serovar Braenderup strain 93 NODE_29_length_55161_cov_11.8087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49743 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 49682 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 49621 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 49560 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 49499 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 49438 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 49377 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 49316 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 49255 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 49194 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 49133 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 49072 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 49011 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 48950 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 48889 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 48828 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 48767 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 48706 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //