Array 1 222317-223703 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WNJE01000001.1 Streptococcus agalactiae strain M171 NODE_1_length_248174_cov_117.136878, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    222317	    36	 100.0	    30	....................................	TACTGGTGTTTCAGGCGGATATAACGACAC 	
    222383	    36	 100.0	    30	....................................	TAATGTCTTTTCCTAGAATGTACATTTCTA 	
    222449	    36	 100.0	    30	....................................	ATTACTTTCAAGATGTCTATGACTATATGC 	
    222515	    36	 100.0	    30	....................................	CGTACCATCTATCAATTTACCGCAAGCTGT 	
    222581	    36	 100.0	    30	....................................	AACTGTGTGATACTTTTCGTTTTTTTCTTT 	
    222647	    36	 100.0	    30	....................................	TTTTATAAGTGATAGAGTGTGCAACACCGT 	
    222713	    36	 100.0	    30	....................................	TTAAAAGATTTAAACTATCAAGCGTCAATT 	
    222779	    36	 100.0	    30	....................................	TTAAAAGATTTAAACTATCAAGCGTCAATT 	
    222845	    32	  88.9	     0	................................----	-                              	Deletion [222873]
    222877	    36	  83.3	    30	AAAC.TC.............................	TTAAAAGATTTAAACTATCAAGCGTCAATT 	
    222943	    36	 100.0	    30	....................................	TTCTAAATGCTGGTGACTGCTTTGCATAAA 	
    223009	    36	 100.0	    31	....................................	TTGCTGCTAGACCCAAACAGTTTATTTTTAG	
    223076	    36	 100.0	    31	....................................	TTGCTGCTAGACCCAAACAGTTTATTTTTAG	
    223143	    32	  88.9	     0	................................----	-                              	Deletion [223171]
    223175	    36	  88.9	    31	AAAC................................	TTGCTGCTAGACCCAAACAGTTTATTTTTAG	
    223242	    36	 100.0	    30	....................................	TCCTTTTTTAGATAATGTGCGATCACGGAC 	
    223308	    36	 100.0	    30	....................................	TCCTTTTTTAGATAATGTGCGATCACGGAC 	
    223374	    31	  86.1	     0	...............................-----	-                              	Deletion [223400]
    223405	    36	  83.3	    30	AAAACT..............................	TCCTTTTTTAGATAATGTGCGATCACGGAC 	
    223471	    36	 100.0	    29	....................................	TTTTACCAATGCTTCCATATCGCTTATAT  	
    223536	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA 	
    223602	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT 	
    223668	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        23	    36	  96.5	    26	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 5.69
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//