Array 1 1541172-1542030 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483416.1 Corynebacterium ulcerans strain NCTC8639 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================== ================== 1541172 36 100.0 35 .................................... TAGCCGAGGTGGACGGCATGAAGACGCAAAGAAGG 1541243 36 100.0 42 .................................... CTCGATAAGACTGCCCACGAATCACTAATTCATCCCCCGTCG 1541321 36 100.0 35 .................................... GAAGAGGAACGCTTACGCAAAATTGCCGAATGGGC 1541392 36 100.0 37 .................................... TTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTG 1541465 36 100.0 39 .................................... GTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCT 1541540 36 100.0 35 .................................... AGCCCACAGAACACTTACTGATTTAGTGGGGGAAA 1541611 36 100.0 58 .................................... CTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAG 1541705 36 100.0 38 .................................... AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA 1541779 36 100.0 36 .................................... GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG 1541851 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 1541922 36 100.0 37 .................................... TTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGG 1541995 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================== ================== 12 36 100.0 39 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAATGCTGAGGAAGATTCCGTTTTATATTGCGATCTTGGACTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATAGAGCAACAACGATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGCTAAGTCAGTTAAAATGAGGGGGCT # Right flank : TGACGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGAGCGGGCTGTTGCTAAGCTCATAGCCGTGCTTTCTCCCCAGCTGGTACTGAGTGATAAGCGAGCGTCAGGTAGTTGGAACTGCCTGGCGCTCATTCATTTTTCAAATGTCACCACACACCCCTACGGAGCATGTACGCACTTCGGATACACGACTCGCATTTGCGTTGTTCAACGCCACAGAACGATATCCAGTCCATCGTCTAGAGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAACATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGCCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 1622837-1622137 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483416.1 Corynebacterium ulcerans strain NCTC8639 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1622836 29 100.0 32 ............................. ATCTAGAAACACTGATTGACCAGCTAATTACC 1622775 29 100.0 32 ............................. TCGGGGCTGAAGGTCCCCACGCGGGGGCCGAG 1622714 29 100.0 32 ............................. TGGTGGACGGGGGCTACTGGCCAGACGATGAT 1622653 29 100.0 32 ............................. CTCATCGGTATATCCCCACTCGTATTCGTCGA 1622592 29 100.0 32 ............................. GATCATCACCAACATGACCGACAGCGGCGACT 1622531 29 100.0 32 ............................. AAGCTCATAAACGGTACGATCAGCGTATTCAC 1622470 29 100.0 32 ............................. CGGCCATAGCCTCGCGCCATTCCTCCACCGGT 1622409 29 100.0 32 ............................. ACTTTGCGCAGGATCAGCTGGACGGCAGTGCC 1622348 29 100.0 32 ............................. AATATCTTTGTGATTCGCCGGCGACAACGGCA 1622287 29 100.0 32 ............................. ACGTGTGGGGCGAAAAGAATCATCAGCTGGTG 1622226 29 100.0 32 ............................. GAGCAATTCCGCGCGGGCCTTAGCCCCTGAGC 1622165 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : AGTATTGTGTTATTAAAATGCTTGTCAGGGACATTTGCCCACGGTAAATCATCTTTAATGTACTCTTGTTCAGAGGCCTGATGCCCTCCCCTCTTAGCGAGAGTAAAGATGTATTGACGAGTAACCCCATATTCCCTAGCAATCTGGGATTGGGTCATACCTTTACCCATTAGATGCATAACTTCTTCAGGTGTAATAACCATTATTCGTCTCCATTGTTGACATGTGAACAATAACTACCTTTTATTTATGTAGATGGTGATGGTGAATACAAATAAGGTGTTTGCGATAGACGTTACATATAAAAAATATATTTCTTAACTATGGTGAATTTCCTGCTCAATATCTATAAATTTGTCAGTGGCTAATATTTGTAAGGTCAGTTTTTTTGGGGGGTATTGATGACCATTCTGGTAACTCAGGAATGGTAAGCAGATTGTTAGAGATGGACTGTCTTTGTGCATGGTTTGAAAACTAAAAGTAATTGAGATAATAAAATT # Right flank : ACTAAATAACCTGCGCGTTTACTCACTCTCCGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAAGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGTTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGCCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 2206678-2205610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483416.1 Corynebacterium ulcerans strain NCTC8639 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2206677 29 100.0 32 ............................. ACGTTGGAATCAACCCAGGCCCAGCCTTCTTG 2206616 29 100.0 33 ............................. TGTGCGGCGTTCTCACCCAGCTGATTCCACGCG 2206554 29 100.0 32 ............................. CGCCAGGCCCGCACTGTGGAAGTTGTGTTGCC 2206493 29 100.0 32 ............................. CAAAGTTTCAATGAGTTCCCCATCAACATCGC 2206432 29 100.0 32 ............................. TTCATCAAGATCATTACCGTTAGTGTCGATCA 2206371 29 100.0 32 ............................. GTCACAGTTTTTTGGTGCAGGTGCTGTGGCCA 2206310 29 100.0 32 ............................. GCCATCGTTAAAGGGATAGCCATGGGCGTAAT 2206249 29 100.0 32 ............................. ACTCAGGATCGTTCCCATCAGGGAATCTGCGA 2206188 29 100.0 32 ............................. ACTCGAAACGCTGCGCGGGTGTCATATCAGCA 2206127 29 100.0 32 ............................. TGCTCGACGACTCAACACCAGGACCGTGGGTT 2206066 29 100.0 32 ............................. TTCCCACCGTGGTGAGTAGGTGGGAAGTAAGT 2206005 29 100.0 32 ............................. TTTGTTCCAGAGGCTCAAGATGTAGTCGATTT 2205944 29 100.0 32 ............................. TGGGAGAAAGTGCTCACCGATGGATTCACCGA 2205883 29 100.0 32 ............................. CAGCCCACAGGGACGGGCTGTAGTGCGGTCCC 2205822 29 100.0 33 ............................. AGCGCAAATTGGATCGTGTGCGTGAGGATATAG 2205760 29 100.0 32 ............................. TTACTTTCGTCGCAACGCCCCACCGTTGCAGT 2205699 29 96.6 32 ............................A TCGGATCATTGGAACCAGCTTTCGCACCCGGG 2205638 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTTTTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCACTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGCTTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGAGTAAACGCGCAGGTAAGTTAGT # Right flank : GTCGTGCGGGTGCTTGTTGAGCACAGCATCGGCCCCACCTGGGTGGGCGTGAACCCAGTAAGCGGGAAAGACCAGTTTATCTGGCTTATTGACCCTGTTTACGCGGATGCTTCGGGTAAATCTTCGCAGATGAAGCTCCTCGCCGCGACTACACGCACCCTAGGTGAACTACTCGACAATGATCCCCACTTCGCCCACGGTTTTAGCCGCAATCCGTTCTACACGGGTAAGTCTCCGTCGGCTTATCGTTGGTATAGGCAGCATAATCGTGTGATGCGTCTAGGTGACTTGATAAGGCAGGTGAGGGACTTGGCCGGGACAGACCAGTACAAGACTGCACCACGCCAGCAGTTTAAGTCTGGGCGAGAACTCATTAACGCGGTGAAAACCCGTCGCGAAGAGGCACAGGCGTTTAAAGTTCTGGCCCAAGACGTGGACGCGGAAGTCTCCGCTGGACTCGACCAGTACGACCCGGAGCTCATCGACGGCGTGCGCGTGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //