Array 1 255-1712 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQT01000029.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP30b x_contig000029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 255 29 100.0 36 ............................. CCAAGCGGATTTAGAAAATGTTTTTAGACAAAAAGC 320 29 100.0 37 ............................. CCCACGTAGCAAATGAAAGAATGGCTAGTGTAGTTTA 386 29 100.0 37 ............................. CGCAACAACAAGATATTTGATGAATTTTTTGAGCGTG 452 29 100.0 36 ............................. CAAATCCTACCCCAAGCACTGATGAGAATGTGCAAA 517 29 100.0 35 ............................. CCTGATATCAATGACAACCAAACAATAAGCGAAGG 581 29 100.0 35 ............................. CAAACTCTTATATTTCCAAAATCTTTATTCTCAAA 645 29 100.0 36 ............................. CCAAATTGAGCTAAAAGCACCAAAAACACAGTTTAA 710 29 100.0 35 ............................. CTTGATGATGTTGAACTTATGCAATACATAGGATT 774 29 100.0 38 ............................. CTGCTTAATGATTTTTTAGCTCTTTTTAACTCGATAAA 841 29 100.0 34 ............................. CTAAATTAGTGCTTAGATTTTCATTATTTAGCCT 904 29 100.0 35 ............................. CACCACGACATCCAGCCATATTACATCCTTTCTAT 968 29 100.0 34 ............................. CAGCGTAAATCGTCTCATTGCTTTTTGGTGTGAA 1031 29 100.0 37 ............................. CCCTCAAGTAGATACGCAAAGTGACCTTTGCCATCAG 1097 29 100.0 36 ............................. CGTTAGCTTTTGTGATGAAATTTATTTTATCTATGC 1162 29 100.0 36 ............................. CTGATAGTTTTCAAGCTCTAGGATCGGATTTATTGC 1227 29 100.0 37 ............................. TCGTCGTTCGCTTGTCGTACCTTGGCGAATCGAGCTA 1293 29 100.0 38 ............................. TTACACAAAGTAGATGATGAAAACTACCAAAACACCTA 1360 29 100.0 38 ............................. TTACACAAAGTAGATGATGAAAACTACCAAAACACCTA 1427 29 100.0 34 ............................. TGCATAACTTTTACTTCTGTTCCACCATTAGCCT 1490 29 100.0 35 ............................. TCCAGATTTATTTCCAAGCTCTATTTGCAAAGCAG 1554 29 100.0 37 ............................. TAAAGTGCACTTAGCACAAACTACAGTACAGGCATTT 1620 29 100.0 35 ............................. CAATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 1684 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATA # Left flank : GCATTTCATCACTACTAACAAATACAAGCTCAATCTCTGCTTTAGTAAGCTCATCGCATATATCATCTAAAATACTAGGGTAATTTGTATCACAAAGTATCAAATTTAGTCCTTGGTGTGAATTAAATCAATCGGCTTTTTTGCAATTATTATTTGCTTATTTTATATAAAATCAAAGATTTTAAAGCACTATTAAAACCGATTAAATTTAGCTATAAAAATTATGGTAAAACTATACGCAAAATATAGCCCTAG # Right flank : CGAGAGTTCATAGATATGACTTTCAGAGAGTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1-491 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQT01000034.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP30b x_contig000034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 30 100.0 34 .............................. AATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 65 30 100.0 37 .............................. GAGAGTTCATAGATATGACTTTCAGAGAGTATGATAA 132 30 100.0 38 .............................. CCTAAGCACTCTTCCTAAAATATCTTTTAAAGAGTTTT 200 30 100.0 38 .............................. GGAGTTGGGTGTTTTGGCTTTCAAAGCATTAGCTTATT 268 30 100.0 34 .............................. TTGAAACGGTTTTGTAGCTCTGATAGTCTTCAAA 332 30 100.0 34 .............................. CTTCTCTTTTTGCCCTTGCGTCTTCTAAAGCCTT 396 30 100.0 36 .............................. GTTTTCTTTGAGTAGGAAGTTTATCTACTATCATCA 462 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : | # Right flank : CAGCAACAAAAACAGCTAAATTTAGTATTTTGTACCAAGTTTTACGATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTAGGCAAAAGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACACTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 28199-30583 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQT01000014.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP30b x_contig000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 28199 30 100.0 34 .............................. ATCTTATTTTTATCCTTTTTATTCAAATTCTTTA 28263 30 100.0 34 .............................. CCATTATTATAATTATGTGATATCTCTTTGTACT 28327 30 100.0 35 .............................. TCAAGAATGGACAACTTGGAGCTTAGAAAACTTCA 28392 30 100.0 37 .............................. AGAGACGATGAAGACTATAAGACAAATAGAGATTATC 28459 30 96.7 35 ........C..................... CTTTGCTTCAATAGACAGCTCATCCCTAATATCAG 28524 30 100.0 34 .............................. ATATAGCAAATGATATTAAATCAAAATGTACAAA 28588 30 100.0 36 .............................. AGGATCGTCTTCATCTTGCTCTTCTAATGCTTCTTC 28654 30 96.7 35 A............................. CATATAGAGTTTTCTAAAAGTTGTTTAAAAAACAG 28719 30 100.0 33 .............................. CTTTTGGTCTTACAACTATCGCACCCATTGCCA 28782 30 100.0 35 .............................. ATCACTTAGGTTTAGTCCGGTTTGAAGAGTAGCTA 28847 30 100.0 36 .............................. TTTGTTCCTTTGGAATAAAATCAATTAAAGTCTTCA 28913 30 100.0 36 .............................. CAAGCCCCTCATTATTGCCCTTATATTCGCCTTTTT 28979 30 100.0 33 .............................. CGTAGCCGTATTTTTCATGAGCAACGCTAGGGA 29042 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAGAA 29108 30 100.0 36 .............................. ACAATGAAGACGAAGTTAAAAACTTCGTAGAAATGG 29174 30 100.0 37 .............................. ATCAACTCGCAAAAGCTCGTTAAAATTCTCATTTTTG 29241 30 100.0 34 .............................. AAGGAATACCCTTATATACAGTCTTTTTATAGAC 29305 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAGAA 29371 30 100.0 34 .............................. TATGGGCGCTTGACGTTGCAAGGTATGGCGATGA 29435 30 100.0 35 .............................. AAAGCAATAGCAGAAGCTAGGGAAGAGTTCGCTAC 29500 30 100.0 37 .............................. TCTAAATTTTGGCAACATTCATAAGAAACTCCTTACA 29567 30 100.0 36 .............................. TTTCACGTCTTTTAACACTAGTGCCACTTTCAAACA 29633 30 100.0 35 .............................. TAAAGGTAGCCCACTGAAGGAGTGTGAGCTTAAGA 29698 30 100.0 35 .............................. TGTTATCAGCGTCTCTTGTCTCACGCAACCTTGCA 29763 30 100.0 35 .............................. ACCGCCAAGCCCAAGCATAGCACTAGCAGTAGCTA 29828 30 100.0 35 .............................. AAAAAACAACTACTAGACCACGGACAAATCAGCCG 29893 30 100.0 36 .............................. TAGCTTTAGCTATTTCTGTTTGAGTTCTAGCTTGTT 29959 30 100.0 37 .............................. AGAGACGATGAAGACTATAAGACAAATAGAGATTATC 30026 30 100.0 37 .............................. ATTATTTTGAAAAATGCTAGTCTTTGGGATAACTCAA 30093 30 100.0 38 .............................. GCTTTTTTCAAGACAGATAAAATAGCACTTGTGGATTA 30161 30 100.0 36 .............................. TGAGCTGAAAAAATACCTTTGCAAGTTTGGCAAAGA 30227 30 100.0 38 .............................. GCTTTTTTCAAGACAGATAAAATAGCACTTGTGGATTA 30295 30 100.0 36 .............................. AGAGCAAATCAAGCTGGTCGATTGGCTCAGGGTGAA 30361 30 100.0 33 .............................. TATAAATTTATCTTGCCTTTGCATCCAAATCAT 30424 30 100.0 36 .............................. GTTTTTAAGAGATGAGTTAATACAAGAAGATAAAGC 30490 30 100.0 34 .............................. AATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 30554 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 99.8 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGGCAGTTAAGTCTCATTAAAATAATAACCAAAATAAAAAGAATAAAACTAAACATCTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATCAACAAAACAGCCACTACTCTAAGTGATGCCTTAGACAAAAATATCAAAACAGCTACAACAGCGATAAAAAAACGCAAATCATAAAAA # Right flank : GAGAGTTCATAGATATGACTTTCAGAGAGTATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //