Array 1 121037-120348 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDO02000001.1 Pseudomonas aeruginosa strain PABL026 NODE_1_length_616657_cov_74.8549, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 121036 28 100.0 32 ............................ TCTTGGGAGTCCCGGCAGGTCAAGGGCCGCGA 120976 28 100.0 32 ............................ TTGAGGCGGCGCTCAACCGCCTAGGCTTCTAT 120916 28 100.0 32 ............................ ATGCTGAGCGAGCAGGCATAGCCACCCATCGC 120856 28 100.0 32 ............................ ATTTCGCAGCCAGAGTGGCAAGACCATATCCA 120796 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 120736 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 120675 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 120615 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 120555 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 120495 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 120435 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 120375 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25810-27097 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDO02000050.1 Pseudomonas aeruginosa strain PABL026 NODE_50_length_37139_cov_69.4039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25810 28 100.0 32 ............................ ACAGTGCGAACGATGTGAGGCCTAGAGCCATT 25870 28 100.0 32 ............................ ACGGGCTATCTGTGGGGTTGGACCGACACCAT 25930 28 100.0 32 ............................ TGGATCAAGACCCACATGCCCGAACACAGGGG 25990 28 100.0 32 ............................ ATGTAGCCGAGTGCGCTGCGACCGGCTTCGTA 26050 28 100.0 32 ............................ TGGCGACGTCCACTCGATGCTGCTGATGATTC 26110 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 26170 28 100.0 32 ............................ ATAGGGCCGAATGAAGTTGATGTGCTTGCCGA 26230 28 100.0 32 ............................ GCGAGGGCGTCGACGCACGCGACCGCGGCGAA 26290 28 100.0 32 ............................ AAGAACGGCTTCAGGCTGAAGCTAGATGCCTG 26350 28 100.0 32 ............................ ACGCTCGGGCCGGCCGCCAGCGGCAGCTCGGC 26410 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 26470 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 26530 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 26590 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 26650 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 26710 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 26770 28 100.0 32 ............................ GTAGTGCCGCCAGCACAGCGCCTCGACGGTGT 26830 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 26890 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 26950 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 27010 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 27070 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37031-35622 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDO02000050.1 Pseudomonas aeruginosa strain PABL026 NODE_50_length_37139_cov_69.4039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37030 28 100.0 32 ............................ AGTCGGGCTGTTGAGTCTTTCCGCTAAAGCAT 36970 28 100.0 32 ............................ AAGAGAACGACTGCTGAATCAGCATGGTCATG 36910 28 100.0 32 ............................ CTGGCCAATGTCGATGCCCTCGCAGTGCAGGT 36850 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 36790 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 36730 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 36670 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 36610 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 36550 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 36490 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 36430 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 36370 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 36309 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 36249 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 36189 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 36129 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 36069 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 36009 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 35949 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 35889 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 35829 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 35769 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 35709 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 35649 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //