Array 1 688723-689174 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUD01000002.1 Nostoc commune NIES-4072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 688723 37 78.4 37 .......A.GC...TTA....G..A............ ATGATTATCTTGCAACTTCAGAGGGTGAAAAACTTCC 688797 37 78.4 36 .......A.GC...TTA....G..A............ CTACAGAAGCGTAAAGGATGTATGACCTATTTTTTT 688870 37 100.0 36 ..................................... ATACAATTGTTGACTTAAATCATTATTGTAATAATA 688943 37 100.0 35 ..................................... TAAAAAGATAAAGGGCAAACAATTACATATCGTAA 689015 37 100.0 36 ..................................... AGGACAACATCTTTATTGAAGGGATGGCAGCAAAAT 689088 37 100.0 13 ..................................... TTTGAACAAGCTG Deletion [689138] 689138 37 78.4 0 CC.GATGA............................T | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 90.7 32 GTTTCCACAAACTAAATCCCCTCACGGGGACTGAAAC # Left flank : TGGGATGGCGAGTACACCGTTGGGTTGCAGCATCTGAAGTCCTTCAACTACCTACCCCAGGAATGTGAGCAGATGCAGTTAATCAGCGATCGCATCAGTCGAGTGTATTCCGATTCGCTGGAGGAGACAGTCGAAAGTCTGTTGCAGTCGTTGGGGAAACTGAATCGGCCTTATCTAACGGCTATCGAAGAGAAATTGTTGGGTTTGATTGAGCGAGAATATGGTGTTGGAGATTAAATCTTCGCAAACTCATAGACAATAATAAATACACATCTTATGATTATGGAATCAGTTTGATATTTGGCAAGTCGAAGCGAGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAATAAATAGTTTCACAGTTTCAGTACTAAGGGAAGTTGATAATTAGTCGCAATAAGAGCGGCTGAAATCGACCTATTTTTGAGGTCTGCCAAAATGCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCACCGAGCG # Right flank : TGATTATGAAACCCGCCACCTAGCCAGCGATGCTAAAGCACTACTGCAAGCAATGGCTAGCTGTCCTGAGTGCTTGACAGAGCAGCAAATACAGGCGATCGCCTCTGTTGTGGCTAATTATCAGATTCCCGAAAATACGACCCCAACGCCTAAGCCAATTCCTAAACCAAAACTCGTTAAACGTCAGAATTCTAGGAGTTGAGTGTTGCTACTGGGAGCAACGCGATTTTGTGAGGTGCTAAAATCTGGGACGTATATAGCTTGTTTCAGGATGCGATCGCAACTAAAAAACCAGATTTTGTTGAGAATATAGGGGTGTAATTGAGAACTAAACCCCGATCTCACTTTTTCGCGTTGCTCCCGTTGCTACTTTATTTTTTAAGTAATTTTACAGTGATCGCTTTCTTTGTTCAATTCAAGCACAGAATAACAAAGCTAGAAACTGGTTCATATAATGCTGATTGCTGTATCAATAAAAAAATTACCTAAATAGTTAATAT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAAACTAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 116029-115701 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUD01000001.1 Nostoc commune NIES-4072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 116028 38 97.4 34 .....................................T CGTAAACGCTCGTAATTGGAAAAATACAGGTGAA 115956 38 97.4 35 ....................................C. ATTTCTTTGACTTGTAATAGCAGCTTTTTGTTATA 115883 38 100.0 33 ...................................... GTTGCTAGTGGTGCGATCGCAATTGCTGGATAA 115812 38 100.0 36 ...................................... AATCAGAGACTCCATCCTTAAAAGACAAAGCTGATA 115738 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 99.0 35 TTGCAATTAATCAAAATCCCTATTAGGGATTGAAACTA # Left flank : TCGGTTCTCAAGTCTTACGGACAATGGATGCAACTGAGTGTGTTTGAATGTGATATCACTCCCACTCAGTATGCTAAACTGCGATCGCGTTTAGCTAAATTAATAAAACCCGACACTGACAGTGTGCGTTTTTATTTCCTCTGTGGCTGTTGTCAGAGAAAAGTCGAACGCATTGGTGGAGAACAGCCACGAGACGAAACAATTTTCTTTGCTGAGTCCCCTTCTGGCTAGGTTTTTGTATATCAAATGCGCAAAAGGGTAGGTGTACAAATTCCACAGCCCGAAAAAAATGCTTTTATCCCAACTCCAGCAAGGCTTTCAACCCATTAGTTCCCTAATCCTCATCCGCGCAATCTCTGAAATGCTTACTAAAATGCGATTTCAGCCTTTAAATTTTCCTGGCGCTCTTTCCAAACAAATTTTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGGTTTCAGGCTTCCGCTA # Right flank : TATTTTTAAAAATCCCAGGATTGTCCAATACCCAATACCCGATTCAAAATTCCACAATTACCGGCGTATGGTCGCTAGGTTGGGCTAATTTTCTAGGCGCGACATCTATAATGCAACTTGTAGCACGCTCATACAGAATTGGTGTGAGATAGTGATGGTCAATCCGCCAGCCTAAGTTACGACGGAAGGCGGCGGCGCGATAATCCCACCAGCTATAATTTCCGCCTTCTGTGGTGAATTTGCGAAAAGCATCAGCAAATCCCAATTTCAGGATATCCCGTAAGGCTTGGCGCTCTGCTTCTGTTGCCATAATGTGATTTTCTGTACTCACTTGCTCGTGAATATCCTTATCTTCTAGGGCGATGTTGAAATCACCGCACACACAAATTGCAGGTTCTGATAACACCAATAATCGCAAATACTCGTGTAGCGCTGTCAACCAGCGTAATTTGTATTCATATTTTTCAGTTCCTACTGCTGCACCATTGGGAACATATAAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAATTAATCAAAATCCCTATTAGGGATTGAAACTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 2 670976-670727 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUD01000001.1 Nostoc commune NIES-4072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 670975 36 100.0 34 .................................... AATACTATCAAAATTGTTGAGTCTTTAGAGCCAG 670905 36 100.0 35 .................................... TAGACTCAAATACATCTATTCAACAAAAGCACAAC 670834 36 100.0 36 .................................... ACAACTTTCATTGGTTGACCATTAGTTGAAGTACCA 670762 36 97.2 0 .........C.......................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 99.3 35 TTGCAATTATCTAAAATCCCTATTAGGGATTGAAAC # Left flank : AGCCTAACCCAGGCATCGCCCTGAAGTCAGCTAACCTAATTAAATAGGATATTTAGTTAAGTAAGCAGCTTTCCCATCAGATTAGTTTGTTCGCTGAATGCGCGGATGGGTAGGTGTTCGGGAAGGAGTGACTCAAAAAATGGCTGAATTGCTCTATATGCAAGAACTTGAGAGCGTTAGAATTTCTAAACCATCCGCGCACCTTATGGGGACTAGTTTTCAGCCATTTGTTTCTAGCCAAATTACAACTCGTCGTGTTACTGACTTTTCCCGTTATCTCCTTGATTGAGCGATCGCTTACTATACCCCTAGCTCAAAGCCCTATTCTCTCGTGATTTATTGTCACTAATATTAAGTTATTGAGAATATACTATAGTCTGAAACTCCTGCTGCTTCGTTGTTTCATGACTTAACGGGAAAAGTCAGGTCGTGTTATGATTTTTGCATTCGCGCAACCGAACCTTGAAAACCAAATAGAGCAAGACTTTCAGAAGCCTGCA # Right flank : TATTATACCAAAATATACCTATGGATGACACAATTATTTACCCAAGCTATTTTCGCATATTTGAATGTAGGAACGGGCGTTGGTTCATTAAAAATCTTGAAGTCTTCGTAACTTTCAGTACAACAAATCACGAAGACATCAAAACACTCTACGGCATCACTGAAGGGCAAATAGTAATTGAATTATTCCGAATTAATGGGGGTAAATCAGGATATTACTTAGCAAACATTCAAGATAAAACATACTATTACTGCGTTGACCGCAACGGGGTAAAAAGCAAATTACTTGAGTTAGGCATTGGGCGAATAGACCCATTGGAGAGCATGAATGGCTAAATCAGCATATCATAGGCACCTACAAAGAAAATCCCCACACTTGGGGCAGGGACTTACTCTAAACAGCTATCAATACAAAGGCAATTAAGATACTTTCGATTGCTGCCATAGGATGAGTTTCAATTCAGAGCAATAGCAACCCCCATCACTAATTTCTTCTTCGTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAATTATCTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 5627922-5628977 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUD01000001.1 Nostoc commune NIES-4072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 5627922 37 100.0 31 ..................................... CTGTTTGGGTCAAAGGAATTTACTGCCCCAA 5627990 37 100.0 38 ..................................... TGTTTGGTTCTAACTGGTAAATAGTGGGCAAGTGTAAA 5628065 37 100.0 42 ..................................... TATCCATCACCTTGAACACGCGATCGCTTTCAGCCCACTGAG 5628144 37 100.0 31 ..................................... AGCGCCCCCATTGAGCGCCGATACCCCGAAG 5628212 37 100.0 40 ..................................... AAACAATATTGCATCTGCTCACGGTGACGAGCGATCGCAG 5628289 37 100.0 35 ..................................... GAGTAAACCCACACTGGATCATAGCCTGCGCTTGA 5628361 37 100.0 33 ..................................... CCTCGCATTCGGTGTGATGTACAGTACCACGTT 5628431 37 100.0 33 ..................................... GTCGGAAAACACCTCAGCAATAACTGATCATGC 5628501 37 100.0 34 ..................................... CTTAGCTATCACATCCAAGGAGAAATTTGTAAAA 5628572 37 100.0 33 ..................................... ATCCAATAGCCGCAGATGTGAAGCCAGTATTAC 5628642 37 100.0 35 ..................................... AAAGCTAATATTGGATGACAATTCATTGTTTAATT 5628714 37 100.0 34 ..................................... TCATGCTAGAGTGCAACACATAGTGTTTCACAGT 5628785 37 100.0 46 ..................................... GGTAAAACAAATAACTCAAGTTCTTGTAACCTAGCCCTAGCGCGGA 5628868 37 100.0 36 ..................................... TCAAACGGTGTTTTGAGTCCGAGAATGTCAATATCA 5628941 37 94.6 0 ...........................A..G...... | ========== ====== ====== ====== ===================================== ============================================== ================== 15 37 99.6 36 ATTGCAATTAACTTAAATCCCTATTAGGGATTGAAAC # Left flank : CAGAACCATCGCTTAGTACATCCTGCTGTGCAAGAGGTATTCCCTGACTTGGTAAATTAAGGTGTGCAAGGATTAGGCGATCGCTTATTTTAACGAACTTTGGGGGTTTAAGTCCCCAGCAAGATAGGCAGCACGTTTTGTGTCGGGGTCTAAATCCCCGTCACAAAACGTAATTGCGAATTGCGTTAGCGGAGCGGGGCGTTAGCCCATTGCGAATTGCGAATTGGTTTAATAGAGGTAGCGATCGGTAATTAGACTAATTTTCTTGCCAAATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGAGTAAAAAAGGCTGTACGCTCAATCTATACAAGACTTTGAGGGCAATGGTACTTTCAAACCATCCGCGCGCCTTATGGGGACTGCTTTTCAGCGATTTGCATCTTGTGCTATGGCTATTCCCTGTGTTATGATTCGTTCATTCGCGCAACTGAACCTTGAAAACCAAATACAGCAGCGCTTTCAGACGCCAGCG # Right flank : CGAATATTCTATTAATTCAACAATTTTGGCGTAAGTTATAATTAATTTTCAAGTCAACAATTCGTTTATAGTTACACTAAAACCCAGTAATACTTTTTGAGTACTAACCACATCACCAGCTTTAAACCCCAAAACCTGATTATCAGTCATTACAAAAACTAACTGACTTTCAGGAAATACTAGCCAAATTTCCTCGCAACCAGACTGCAAATACTCCTGTGCTTTGAGAAATAATTCTTCAGCTAAATCGGTGGGTGAAACTATTTCAGCAATTAATGGGAAACTCTGTGGCAAAGTGGGAACATCACCAAACTCAGCTACCAACTGAGGTGTCAGATAAGCTACGTCAGGACGGCGACCCTGTTTATATGTGCGACAAGGTACTTCAGTATAAACTTTCCCACCTTGTTGAATGGAGTTGATATAACTTCTCCAATAAAAACCAATATTAAACTGAATTTCGCTGTGTTTTAATGTCATCCCTGTTTTTTCTACTAGTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //