Array 1 95095-97522 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWK01000005.1 Pasteurella multocida strain HND09 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95095 28 100.0 32 ............................ ATGACGACGAATTAAATCATCATCAGAAACAA 95155 28 100.0 32 ............................ TTGACTTCCACCTGATCTTCAATGAGCACTTG 95215 28 100.0 32 ............................ TTGTGTTCTTGTTGAGATAATAATATGCCTTC 95275 28 100.0 32 ............................ TGTAAGAACGTACCAACTCTTTCATATTTTTT 95335 28 100.0 32 ............................ AAGACAGGGACACGTAGTGTTGAATACGTATA 95395 28 100.0 32 ............................ ATTTTCTCAATTCACGCATAATCATTTCAAAT 95455 28 100.0 32 ............................ ATTAATATTTGGCGCTGTGATTGTGCTATTCG 95515 28 100.0 32 ............................ TCTCTATTCTTAACTCCGCTATTTTTATCACG 95575 28 100.0 32 ............................ TTAATTCTATTAACTTTAGTTCATGCAAGTAG 95635 28 100.0 32 ............................ ATTAGCCTGCACGTTAACGTGACTAACTTTAT 95695 28 100.0 32 ............................ CGTTGCGATGTTGCCGAGCTCGAGTTTAGGTT 95755 28 100.0 32 ............................ ACCACTTATCGGGCGCGATTTTCTTCACGGAA 95815 28 100.0 32 ............................ GCATTTTTCAGCCACTCTTGCCATTCAGTATT 95875 28 100.0 32 ............................ AAGTAATGTTTTCCGATCTTCTTCGGTAACTC 95935 28 100.0 32 ............................ AACTTCAATTCAGATGCCAACACCGCCATATT 95995 28 100.0 32 ............................ ACACCAGTCGATCCGGACAAAAACTTACTCAT 96055 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 96115 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 96175 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 96235 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 96295 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 96355 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 96415 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 96475 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 96535 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 96595 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 96655 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 96715 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 96775 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 96835 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 96895 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 96955 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 97015 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 97075 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 97135 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 97195 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 97255 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 97315 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 97375 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 97435 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 97495 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================ ================== 41 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15753-16140 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWK01000007.1 Pasteurella multocida strain HND09 Contig007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15753 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15813 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15873 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 15933 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 15993 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 16053 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16113 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //