Array 1 1440-252 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFC01000111.1 Escherichia coli strain MOD1-EC6011 MOD1-EC6011_111_length_1518_cov_44.4913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1439 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 1378 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 1317 29 100.0 32 ............................. AGGAGTTTAATTTCCAGATTGAGCGCTGGATA 1256 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 1195 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 1134 29 96.6 32 .T........................... GTGAGTCCGTCAGCGGTGCGCCGCTGCAACAC 1073 29 100.0 32 ............................. CTCGATCAGGAAAATGAATTCCTGGAAAAAAA 1012 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 951 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 890 29 96.6 32 .T........................... GTGAGTCCGTCAGCGGTGCGCCGCTGCAACAC 829 29 100.0 32 ............................. CTCGATCAGGAAAATGAATTCCTGGAAAAAAA 768 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 707 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 646 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 585 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 524 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 463 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 402 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 341 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 280 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107790-107992 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFC01000006.1 Escherichia coli strain MOD1-EC6011 MOD1-EC6011_6_length_129870_cov_34.1366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107790 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 107851 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 107911 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 107967 26 85.7 0 ................A...-A..-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 923-161 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFC01000017.1 Escherichia coli strain MOD1-EC6011 MOD1-EC6011_17_length_84164_cov_36.6362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 922 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 861 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 800 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 739 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 678 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 617 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 555 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 494 29 100.0 32 ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 433 29 100.0 32 ............................. CGGCTTATTGCTCTTGCCGACGGATTACAGTG 372 29 100.0 32 ............................. GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC 311 29 100.0 32 ............................. TACATGTTGATGACGTTTGCCAAATGCCATGG 250 29 100.0 32 ............................. CCGAGCATTATATCCTGTGCGTCGTTCATTTA 189 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACTCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25484-26793 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFC01000016.1 Escherichia coli strain MOD1-EC6011 MOD1-EC6011_16_length_86287_cov_35.5579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25484 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 25545 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 25606 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 25667 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 25728 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 25789 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 25850 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 25911 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 25972 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 26033 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 26094 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 26155 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 26216 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 26277 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 26338 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 26399 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 26460 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 26521 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 26582 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 26643 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 26704 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 26765 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //