Array 1 1108980-1108585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMN010000003.1 Lactiplantibacillus argentoratensis strain LQC 2516 Scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1108979 29 100.0 32 ............................. CAACCGCCATTATCCAACCAATTCGCTAGCTG 1108918 29 100.0 32 ............................. AACATCAACATCGAAAGCCCATTGGGACTTGG 1108857 29 96.6 32 ............................T ACCAGCGACCGCCCTCATAATCATTCTTAAAT 1108796 29 100.0 33 ............................. GGACAATCGAGCCAGTAACCTGTATTGGGCTGA 1108734 29 100.0 32 ............................. ACGATCGACACTTCTAAGTATCCGAATGGTGG 1108673 29 89.7 32 ................T.......C...T TCTAAACCCGTCGATTTCGACTGGTTTAAAAA 1108612 28 89.7 0 ...............A.......A.-... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.6 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : TACTGGTAGTTATATACGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAACTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTTATGTGAGCAAGAATCGTTGAAACAATAAATAATCTGCGCTACGGATGAGATATGCCTGCTGCAAGCCTAGTACTTGGGCCCACCGCATAGTTATTAATCATAAATTTATCTCTTAGCATTTTGTATCACATAATTTATGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCTATACATTGAAGGCCGCCTTGCTTGTTTCGTCATATTAATAGTGTTCATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTACTGCTATAATAGGCTTTGTTTAGT # Right flank : AAACAAAGCCATAGATAAAGCAACAAATCACTTTGAAACAAATACGACTTTACAGATATAGACGTGCACACTTTACACATCAGCACGCTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATGTGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCCTTCTATGTCATTTTCTATAAATGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTGTTACCAATAAAGGCCTTCATTTCACTCAACGCCATAGCTATCGAAACACCTTGCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1117282-1117620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMN010000003.1 Lactiplantibacillus argentoratensis strain LQC 2516 Scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1117282 29 100.0 33 ............................. GACTGACATTGCGAAGTTGAGTGATCGCGATGG 1117344 29 100.0 32 ............................. GAGCCTACTGCTGCTAAAGATGCAGTCGCTGC 1117405 29 96.6 33 ............................A CGTGAATTTTGCCATTACATTTCATCCTCTCCA 1117467 29 100.0 33 ............................. ACGCTTAAAACTCAAGTTTTCAAGTATGTTTAG 1117529 29 96.6 32 ............................C GACTGTTCCAGCCTTGCCCGTGAAGCTAAGCG 1117590 29 96.6 0 .........G................... | GT [1117611] ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.3 33 GTGTTCCCCATGTATGCGGGGGTGATCCT # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCCGGGCTGGCTTTGAGTTGGTTGATCATCGTGAGACAACATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCCATGCTTCACCGAGCTAAAGGGCACGGCGTTCGCTTAAGTCGTGTGACATTTGAAGGACTCCTATGTGTCAAAGACCTACCAACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTGATGACGGTCATTCCTGAAGTACAGTGATTGACTTACATCGGTGTTTACTGGATTGGTGAGCCTGGAACCAATGCTGACGAACCAGGGATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGCTATCCTCGAAGTCAAGTTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGCGGCGGGATTTGTCAAGT # Right flank : TTGGCTTGAATGCAGCAGTGACCCGCACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGGATTAGCGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTGAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACACCGGCGAACATCTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAAGTGACGAGCGAAATCAGGAAGATCAGTGTTGAGACGAAGAAGAATAGGGACCAGATGATGCTCAGTGTTTGATCAGTGATAAAAGCCCATTGTTTCAAATACTTGCCTGGATGAGTGGCAACCCGTTTAAAGTTGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //