Array 1 583-292 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTF01000018.1 Bifidobacterium longum subsp. longum 1-6B contig00163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================== ================== 582 37 100.0 26 ..................................... AGAAGTGCAGATTCGTTCCTGCAAAC 519 37 97.3 26 ....................................A GGACGTGCAACGCAAGTATTCAAGAT 456 37 100.0 27 ..................................... CGTCGATGTGTTCCAAGAGGTTTGGTG 392 37 100.0 27 ..................................... ATTGTTCGGGTGCGATGGTGATGATCA 328 37 83.8 0 ..............................TTG.ATG | ========== ====== ====== ====== ===================================== =========================== ================== 5 37 96.2 27 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGCT # Left flank : | # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGCTGAAAACCAAGATGATGAATCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.20, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 179-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTF01000027.1 Bifidobacterium longum subsp. longum 1-6B contig00093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 178 36 100.0 28 .................................... GATAGGCGGCTCGGCCTTCCTCGATGGT 114 36 100.0 28 .................................... GTCATTTCGATGCGGCGCAGGCCGCAGA 50 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CAACATATATCAACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 10909-9668 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTF01000098.1 Bifidobacterium longum subsp. longum 1-6B contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10908 28 100.0 33 ............................ GGCGTGACGGATGCCCCCTATCTCATGTCACGA 10847 28 100.0 32 ............................ ACAACGTCAGCTTGGCAACATCGACAAGTACG 10787 28 100.0 33 ............................ GTGAGTCACTGGTAATGGTCATGGAGCCGTTGC 10726 28 100.0 33 ............................ CTAGTGCCGACCGTAATGCGCACCGGCAGATAC 10665 28 100.0 33 ............................ GGTCGCGCCTCAGGAGCTTCGGAAGCTTTTGCC 10604 28 100.0 33 ............................ GTGAGTGGAAGTCCTGCATGGCGTATCGCCAGG 10543 28 100.0 33 ............................ CCCAGCTCAAGCTCACGGGCCACGTCCTGCTCT 10482 28 100.0 33 ............................ TTCCACGGCATTGAAATCAACGGGTTCGCCTGC 10421 28 100.0 33 ............................ GGACTGGGATCCCCGCGTCAAACGATATCTTCC 10360 28 100.0 30 ............................ GGTGATCAAGGTGGACGACGAAATCACACC 10302 28 100.0 33 ............................ GGCGCGTGACGTTTCCGATGGGACTGATGACAA 10241 28 100.0 33 ............................ GGCAGTGGATCGTCTCCAACATGATGGACGAAT 10180 28 100.0 33 ............................ GTGGACGACATGGCCCCAAAAACGAGGAACGTC 10119 28 100.0 33 ............................ GCCTTGGCGGTTCAGTGCCACCCGCTGGAACGG 10058 28 100.0 33 ............................ GGAGACGTCGAAGGCGTACACGGGTTGGGTTCC 9997 28 100.0 30 ............................ GGTACTCACAATGGCCGACGAAATGAAGGA 9939 28 100.0 33 ............................ GGACGGCCTGACTCAGTACGAGCTTCAGACGCT 9878 28 100.0 33 ............................ GAAATAGGCAGAATCTAATTGCCCAATTTTGGC 9817 28 100.0 33 ............................ GTCTGGCTACTCGATCATATGAAGGCTTGTCCA 9756 28 100.0 33 ............................ TGGCACGTGCAAGTACTTGACTTGGTTGGTCTC 9695 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGATTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CTTGGAAGCGGGTGCTTAAAATATTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCAAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATTTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 14902-14627 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTF01000098.1 Bifidobacterium longum subsp. longum 1-6B contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14901 29 100.0 32 ............................. TACGGAACTCATGTTAGCTAACGCTTACAATT 14840 29 100.0 32 ............................. TCATCAGGAAAAACGACACCAAAGCCAAAGCA 14779 29 96.6 32 ..............T.............. GACGATCGACTCGCTCCTTCTGAACCGGAATG 14718 29 96.6 32 ............................G TAGCCGTTGTTCTTGCCGACGAACGCGGCCAT G,C [14695,14708] 14655 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 ACCTACCCCGCACACGCGGGGATAAACCT # Left flank : CGGATCCGAAGGCATCCAAATGGTCATTGAACGGCATGAAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACGCTTCAACAAGGCTTTACGAACGTTGGCTGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGTTGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGGATAATCCGACTGTTGAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGGTCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : GTGAACCGCTTTTATTGACATCTGACTTTTGTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACCG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //