Array 1 44982-46351 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNI01000004.1 Salmonella enterica subsp. enterica serovar Saintpaul strain SLRe1401 NODE_4_length_224865_cov_37.4959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44982 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 45043 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 45104 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 45165 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 45226 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 45287 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 45348 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 45409 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 45470 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 45531 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 45592 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 45653 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 45714 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 45775 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 45836 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 45897 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 45958 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 46019 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 46080 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 46141 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 46202 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 46263 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 46324 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62611-63373 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNI01000004.1 Salmonella enterica subsp. enterica serovar Saintpaul strain SLRe1401 NODE_4_length_224865_cov_37.4959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62611 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 62673 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 62734 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 62795 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 62856 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 62917 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 62978 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 63039 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 63100 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 63161 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 63222 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 63283 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 63344 29 96.6 0 ............T................ | A [63371] ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //