Array 1 9992-9301 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFDA01000059.1 Bacillus thuringiensis serovar londrina strain BGSC 4BF1 4BF1_contig000059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9991 32 96.9 33 ...............................A AACACATTACTACCACGTATCCCCTATTCGTCA 9926 32 96.9 36 ...............................A AAAAAATAGGTAAAGCAATGGATGATTTCAACAAAA 9858 32 100.0 32 ................................ TTGATGTTGAGCCTTTCCATTGGAGCAACTAA 9794 32 100.0 33 ................................ CAACCCCAAAAGTAAGGGAAAAGATTAAAATCA 9729 32 100.0 34 ................................ TAGTTCCCTAGTAGGTCATGCAGCGGTCGTAGAT 9663 32 100.0 35 ................................ AATACAACAAGTGGAACGACCGTAGCGGAAATGGG 9596 32 100.0 34 ................................ TTTGCATTTATCACAAGTGTACTTAACACCAACT 9530 32 100.0 34 ................................ CTGGTACAACTTCGCAAAACGCACCACTGGAAGG 9464 32 96.9 34 .................A.............. ATGAGAGTATAGCAAGTGTTTACCTGGCGCAATC 9398 32 96.9 33 .................A.............. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 9333 32 68.8 0 ....T.T..C.......AA..A.AG...G.C. | A [9306] ========== ====== ====== ====== ================================ ==================================== ================== 11 32 96.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCAGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTAGTGCATTCGCACCTGAATTTTCATGATTTATGAGCGAATTTTAATATTTTTTATACAAATTTTCTTATTAAATAAAGAAATATGTATATTTTTGAATAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : GGTAAGATGCTTGATAATAAGTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATTCATACGGCAACAAGTATTGATCCGATTGATATTACTAGTATGCAGATTACGAAAATTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAACACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGTGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTATATAGGAGCGTGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19412-18322 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFDA01000059.1 Bacillus thuringiensis serovar londrina strain BGSC 4BF1 4BF1_contig000059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19411 32 100.0 35 ................................ TAATGACAGTATCTACAATGGTGGCATCCCGTGAA 19344 32 100.0 34 ................................ CTGTAGACGTTCCCGGTAAAGAAGCGGAAATGTC 19278 32 100.0 34 ................................ ATAGAGGACTTAGTAACGAATTTAAGAAGGTTGC 19212 32 100.0 34 ................................ ACTACCTTGTTTAACCGCTAAACCTTTTGGCGAT 19146 32 100.0 33 ................................ CTTAGAACCTATAAAAGAACAACCTTCTACCAA 19081 32 93.8 34 .........C...A.................. TCAGAACCTTTTTTAATAATGTAAATAAAGATCA 19015 32 93.8 34 .........C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 18949 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 18881 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 18816 32 93.8 34 A..........A.................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 18750 32 93.8 34 .........C..........A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 18684 32 93.8 34 ..A........A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 18618 32 96.9 34 .........C...................... TCCAAGGGGGAACTGGGAGAAAGTAACTTAATGG 18552 32 96.9 34 .........C...................... GAATACGATTATCAAGATGAAAGCACAAAAAAAG 18486 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 18421 32 96.9 34 ...........A.................... TACCTCGGGTTTATATTTATCTGGAACGCTCATA AA [18407] 18353 32 96.9 0 ..............G................. | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 96.4 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AATCAAGATATCCTTAATAATATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGATTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTTTTATACAAATTAGTTTATTAAATAAAAACATTTTTATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : AGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATGAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTATTATACCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATTA # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //