Array 1 308290-312154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBJ010000016.1 Streptococcus uberis strain GCPRG114 Contig_16_239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 308290 36 100.0 30 .................................... ATCTGCCAACAAACCCAAATTCAGCCTCAT 308356 36 100.0 30 .................................... GCTTGTTCGTATTCGTCAAAGAAGTTAGTT 308422 36 100.0 30 .................................... TTTAAACTCTGCAAATAAGGTCCAGTGCAT 308488 36 100.0 30 .................................... CAATTGTTGGATATTTTGCCTACATGAAAT 308554 36 100.0 30 .................................... TGAGTCGTCAACCCAGTCCAGCATAAACTG 308620 36 100.0 30 .................................... ATACTCAAGCACTGTTATTGTTTTATCGAA 308686 36 100.0 30 .................................... TTTAAAGTATCATTTTATACCAAGGCATTG 308752 36 100.0 30 .................................... CTACTGGTAAGACGATTGTATTATCTTACG 308818 36 100.0 30 .................................... ACTTATTTTCAAATTTAGCATAAGGCCCAT 308884 36 100.0 30 .................................... GGAGTAGAAAGTTTAAAGGTTGAAACTAAT 308950 36 100.0 30 .................................... CAATTCAATCTTACAAGGTAATGCTGGGGT 309016 36 100.0 30 .................................... ACACCTTCCCAAGCCGATTTTAATCCGTTT 309082 36 100.0 30 .................................... TTATTTCTATGTTAAACAATCTATTAAAAG 309148 36 100.0 30 .................................... ACATCGCCTTCAGTTTTCCCAAGCACACGT 309214 36 100.0 30 .................................... TGAAACAATTGACAATAAGTCAATGTATAG 309280 36 100.0 30 .................................... TTCAATGGTCGTTATCGATGCATACAAGCA 309346 36 100.0 30 .................................... TGCATATCGTACAGATGGAACAACAACCAT 309412 36 100.0 30 .................................... ACCAATCATAACGCAATGTATGCGTATAAG 309478 36 100.0 30 .................................... AGTGGAATGATACCAAAATTTAGAGCTTGG 309544 36 100.0 30 .................................... TTCTGAAGGTGCTGACTTGCAACAGTCGCT 309610 36 100.0 30 .................................... CTCTTAATAACTAATTCTTTGCTTTCTTTT 309676 36 100.0 30 .................................... TTGATGCAGAAATTGAATTTGAAACTATCT 309742 36 100.0 30 .................................... AAAACAGCTTGAGTTGAGGAAGTCCAAGCA 309808 36 100.0 30 .................................... TAGAAATATTGCAATCATGGGATGATTACC 309874 36 100.0 30 .................................... TTTAGTATAAGGTTCATCCTCTTCTGCCCC 309940 36 100.0 30 .................................... ATGTTATGTTGCGATGGACTGGTGAAGCTT 310006 36 100.0 30 .................................... CATCATATGTCTGTGCTCAACTCTGTTATT 310072 36 100.0 30 .................................... TTCTGCGATTTTAAAAATCTTGTTCCTTTT 310138 36 100.0 30 .................................... TTTGCTATCAATCTTGAGTTGAGTGTCTTC 310204 36 100.0 30 .................................... TGATGAGTCTAATATTATCCATTGCAACTA 310270 36 100.0 30 .................................... TTGCAATTGAGAATGCATTTGAAGATTATC 310336 36 100.0 30 .................................... AAGCAAACTTAAAAGTGGAACTGGACAAAT 310402 36 100.0 30 .................................... GTTATCAGAGTATGATTTTTTGAATATGGA 310468 36 100.0 30 .................................... ACAACACTACTTCAAAAATTAGGTGGTAAT 310534 36 100.0 30 .................................... CCGTGCTAAGTCAGGTAAGTCAATGATGTG 310600 36 100.0 30 .................................... AATGTCTGACAAATGGATAATGAAAAACAT 310666 36 100.0 30 .................................... TGTGAATGGTGTCAATTTTACTGGATTGTA 310732 36 100.0 30 .................................... TGTTGGTTCGTTCGACTTCATCGGCGGTGT 310798 36 100.0 31 .................................... CTTACAGAAAAAGAGTTTAACGTAAAAAAAT 310865 36 100.0 30 .................................... AAAATATATGACAGAAATATTCCATGTTGA 310931 36 100.0 30 .................................... CTTCGGATGGAGTGAGCACAGACGAATTAA 310997 36 100.0 30 .................................... CTCTTCCCCCAGCATTACCTTAACTAACTT 311063 36 100.0 30 .................................... ACGAGCGGAAGATGAACGATTTAACTTACT 311129 36 100.0 30 .................................... CTTCTTCAATCGGAATTCCGAACATCTGGC 311195 36 100.0 30 .................................... GCGATTGCAAGGTACGTTCTTGCAAGAAGT 311261 36 100.0 30 .................................... AGCATGAAATCAACAAATATATTTGATAAA 311327 36 100.0 30 .................................... TAATTCCCTTCTATTTCTTTAAAACCAAGG 311393 36 100.0 31 .................................... TAAAGCTGATACAAACTACACGAGTACACTA 311460 36 100.0 30 .................................... ATTTAACATTTAGGTCCTCCTCTTTGACAA 311526 36 100.0 30 .................................... CTTAAATTCAGGGTAGCTAGCAAAAGTTTC 311592 36 100.0 30 .................................... TTCACAGCTAAAACAGTTGCAGACCTTGAT 311658 36 100.0 30 .................................... AACGTGCTTTTTCGATAGCATCTGCTTGTT 311724 36 100.0 30 .................................... GGGTTGCCTTGGTCTGTTTCCCACCAGTAA 311790 36 100.0 30 .................................... AATCTAACAAACACCAAAATGAAGCAACAC 311856 36 100.0 30 .................................... TGTCGTATTAAATGAGATGTCATAGCTAGC 311922 36 100.0 30 .................................... AACAATATGTTCAAAAAAACCGTAGGGAGT 311988 36 100.0 30 .................................... CTTTATCGAAGAAGAGATTTTATTCTTGAT 312054 36 100.0 30 .................................... ATTAAGTCTTGAAGCCAACAAGGAAAAACG 312120 35 77.8 0 ............C...G....AT....-G....C.T | ========== ====== ====== ====== ==================================== =============================== ================== 59 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACAATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTCGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATATCTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATCAAGATTTCTATCTTATGCCACCAAAAGTGGTATAATAGTAGTAGAATATATCCCAATCAACGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACCTTTTGGAAAAATTCTTCCACGAG # Right flank : TTACATAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTGCTTACTTTTCTCATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTACTGCTTAAAATGTATAATTATTAATAAAATAGTCTTAAAAATGTATATCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATCGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //