Array 1 21995-22425 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPQJ01000003.1 Staphylococcus muscae strain DSM 7068 127ce550-4d03-421f-a617-cd1eccd8720d_c3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21995 36 100.0 30 .................................... AAAAAAATTAAAAGATTACTAGACAGTGAT 22061 36 100.0 30 .................................... CATTAACAGTTTGTCGTGAATTAACACTTA 22127 36 100.0 29 .................................... TTTACGCCGCCACGCCCTTACGCTAAGTT 22192 36 100.0 30 .................................... AAAAAGAAAAAAACCGCTTGGGAAAGACGA 22258 36 100.0 30 .................................... TCACGCACTCTTGCCCCATATAGTTTTGCA 22324 36 100.0 30 .................................... TTCCATTTTTGGGGCGAAGCCGGGGGTGCA 22390 36 77.8 0 ...................CCG...G...A.T.GC. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GTATGATCAATGTTACAGATATTCCAGCATCATATCAAAAACAACTTCACACTGACAGCGGCGTTTATGTTGCAGAAGTTCAACGCAGTCAAAGCGGGTTGAAACGTGGTGATATCATCACTAAAATCGATGATCAGAAAGTTGAAAACGATTCTGATTTACGCTCGTATTTATACAAAAATAAACAACCGGGAGATTCTGTTAAATTTACAGTTATACGTAATGGACAATCCGAAAACGTAAATGTAACATTAGTTGAGTCTCAATAATTAGATAAAACCATTGAAATGTTATTTCTGGCATTTCAATGGTTTTTTTCAATAAACTAATGAAGATTGATGAAACCTTCTATACATATTTCACAAAGTTGATATATCATTTCTCATTAATATCGCTGCATAGTTATGTCTTTTAGAAAAAACTTCAATACTTCTATAATCGAAAAATAGTGAAAATAACTGCTGAATTATTAAAAAGGATAAGGTACAATAATGCTAGAG # Right flank : GGAAATTGTTGCTTTTGAATACTTTATAATAGGTGTACCTGTCGTTTTTTTAAGTTCTTTCATTTTAAAATTCAATAATCTTTTCTAAATTCTTATTGTAGATACATATAAAAGTATAAGAATCAATAACTATCACGATTAATAATTTAAACTCTTCCCTATATTCTAGAGACTGTTACAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1626-1461 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPQJ01000165.1 Staphylococcus muscae strain DSM 7068 127ce550-4d03-421f-a617-cd1eccd8720d_c166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1625 33 100.0 33 ................................. AACTCTTGATGTCAGTAGTCCTACATAGCCTTT 1559 33 100.0 33 ................................. AACACAAAAGGTTGATTTATTTGAGTATTCTCT 1493 33 75.8 0 .....................T.T..CC.TACG | ========== ====== ====== ====== ================================= ================================= ================== 3 33 91.9 34 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGA # Left flank : GATTTATTTTTAACTACATGATGTGTTGTTTTGCCTTTTGCTGCTTTAAATCATTTGGATACACAAAAAGCGCTCATGTCTCTATCATTTTAAGTGACTAAACCAAAAATAAAGAGAAAACATGATGCGCCTACATATAATGATATATTAAAACTAATAAAAATAAAAGATGGAAATATTCAAGTTATGAAGGTGGAAGAAGATGTAGAAGTGCGTGGTCGGTTTTCCACGGTTGTTTATGGAACACTTTCTTATACATCAAAGGTTGAATGAAGTGTGATTGTATCAATGATGGACAAATACATAAATGTGGTAACACTGTTAAAATCTTAAGAATCGTATATCTCAATTTAGTGAAAGAACGCTTTAAGTGTCTACATTGTTTAAAAAATTTATGGCTCAAGCAAGAACCATCTATGTAGAATATTTAAAAGCTGATATATTATTGCTAGAAATAAAAGCTGAATTATTGAAAACATTAGGGTATAATGATGCTAGAG # Right flank : TTACAAAAGACATGGTAAATTGAAAACAGACGAATTTATATGGAAATCAATTGATAGGAATATTAACTATGTTTAAACGATAATATGGTAATAGCTTTAAAAAGCAAATTGATTAATTAGTAGGACTTTTTCAAAAAGAAAGCGAATATTCAAAAAATATAAGTGAATTTATTTTAATATTAATGAGTTAGCTAAAACAATTGAATATTATAGTAAATCTCTCTCGAAAATCAAAATGAAAAGGTGATATGATGAGAAAAGAAATTGAAAAGTTATTAGAGTCTGATATATCGCATTATAAAATTTCAAAAGTAACAGGTGTAAACAGTAAGACAATTTCGGAATTACGAGCTGGGAAACGTAAGATTGGCAATATCACACTAGATACTGCTGAAAAACTATATAATTATCAAATACAGCTGGAAGATAAATGAATAAATCTCACTTATTAATTTGGGTGGGGTTAATTGTTGTTTAATTGATACCATTATGACGCGTAA # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.19%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //