Array 1 406309-404720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHO01000003.1 Pectobacterium atrosepticum strain NCPPB 3404 ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 406308 28 100.0 32 ............................ AGTCCGTCACGAACTTCAAAACGTTTAGCCCA 406248 28 100.0 32 ............................ AGCCTGGAAGACATCGCCGGTCAATCGGGGCG 406188 28 100.0 32 ............................ ATTTCCTTTTTCAGTGCATCCGTGCGGATTTT 406128 28 100.0 32 ............................ CCGATTAGTGAATATCGGTGTCGGCACACCTC 406068 28 100.0 32 ............................ AGATTAATAACGTCACGTTCCCAGGCGAGGTG 406008 28 100.0 32 ............................ GCACATATCATCGCACGCATCCAAATGCGATG 405948 28 100.0 32 ............................ CGATGGCGGAAGCGGTCAGGCTCAAGGACAAA 405888 28 100.0 32 ............................ TGCACCTCACCGGTTGCCAGCTTACGCAGCGT 405828 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 405768 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 405708 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 405648 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 405588 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 405528 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 405468 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 405408 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 405348 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 405288 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 405228 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 405168 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 405108 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 405048 28 96.4 32 ...........C................ GTATCCAGTGACCGACGAATCAGCGCTCGACA 404988 28 96.4 32 ...........C................ TGCGCATTGTGGACAAAATCGCGCGGCGTGTT 404928 28 96.4 32 ...........C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 404868 28 100.0 32 ............................ GTTTACGATTCTGCTCACGTCACTAATTTCAA 404808 28 96.4 33 .................T.......... CACGCGAGATCGCTGTTCAGGCCGAGGCAACCC 404747 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACAACACTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAATCTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCTAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CAGCACTCAGGCACTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTATCTTTGGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAATGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 416409-416916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHO01000003.1 Pectobacterium atrosepticum strain NCPPB 3404 ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 416409 28 96.4 32 .............C.............. TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 416469 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 416529 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 416589 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 416649 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 416709 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 416769 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 416829 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 416889 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCTGCGTCAGCACGCTCTTCTTGCAGAAAAGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCAAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTACCACAGGGTTGGCACCCTTTTTTCATGGACGCTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : CTTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //